Prionailurus bengalensis (leopard cat): 122479915
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Entry
122479915 CDS
T07574
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
pbg
Prionailurus bengalensis (leopard cat)
Pathway
pbg03015
mRNA surveillance pathway
pbg05014
Amyotrophic lateral sclerosis
pbg05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
pbg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122479915
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
122479915
05022 Pathways of neurodegeneration - multiple diseases
122479915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbg03019
]
122479915
Messenger RNA biogenesis [BR:
pbg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122479915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
122479915
NCBI-ProteinID:
XP_043429668
LinkDB
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Position
C1:7970727..7984112
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AA seq
414 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGNMQ
REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatatattcgggtaaccgaagatgagaacgacgagcccatcgaaataccatca
gaagacgacgggaccgtgctgctgtccacggttacagcccagtttccaggggcctgtggg
ctgcgctacaggaatccagtgtctcagtgtatgagaggcgtccggttggtggaaggaatt
ctgcatgctcccgaagccggctggggaaatctggtatatgttgtcaactatcccaaagat
aacaaaagaaaaatggacgagacggatgcttcttcagcagtgaaagtgaaaagagctgtc
cagaaaacatcggatttaatagtgttgggtctcccatggaaaacgactgaacaggatcta
aaagaatattttagtacctttggagaggttcttatggttcaggtcaagaaagatctcaaa
actggtcattcaaaggggtttggttttgttcgttttacggaatatgaaacccaggtgaaa
gtaatgtcacagcgacatatgatagacggacgatggtgtgactgtaaacttcctaattct
aagcaaagcccagatgagcctttgagaagcaggaaggtgtttgttgggcgctgtacagag
gacatgaccgccgatgagctgcagcagtttttttgccagtatggagaagtggtagacgtc
ttcattcccaaaccgttcagggcttttgccttcgttacgtttgcagacgatcaggttgcc
cagtctctttgtggagaggacttgatcattaaaggaatcagcgtccatatatccaatgct
gaacctaagcacaatagcaatagacagttagaaagaagtggaagatttggtggtaatcca
ggtggctttgggaatcagggtggttttggtaacagtcgagggggtggagctggtttggga
aacaatcaaggtagtaatatgggtggggggatgaactttggcgcttttagcattaatccg
gcaatgatggcagctgcccaggcggcactgcagagcagctggggcatgatgggcatgtta
gccagtcagcagaaccagtcaggcccatcgggtaataaccaaagccaaggcaacatgcag
agggagccaaatcaggcctttggttctggaaataactcttatagtggttctaattcaggt
gcagcgatcggttggggatccgcatcaaatgcagggtcaggcagcggttttaatggaggc
tttggctcaagcatggattctaaatcttcgggctggggaatgtag
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