Caldimonas brevitalea: AAW51_4916
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Entry
AAW51_4916 CDS
T04216
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pbh
Caldimonas brevitalea
Pathway
pbh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AAW51_4916 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbh03021
]
AAW51_4916 (rpoB)
03400 DNA repair and recombination proteins [BR:
pbh03400
]
AAW51_4916 (rpoB)
Enzymes [BR:
pbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AAW51_4916 (rpoB)
Transcription machinery [BR:
pbh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AAW51_4916 (rpoB)
DNA repair and recombination proteins [BR:
pbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AAW51_4916 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AKJ31607
UniProt:
A0A0G3BQB0
LinkDB
All DBs
Position
complement(5752254..5756363)
Genome browser
AA seq
1369 aa
AA seq
DB search
MAYTYTERKRIRKSFGKRESVLNVPYLLTMQKDSYVAFLQQDVPPQKRKNEGLQAAFLSA
FPIVSHNGFVEMKFIEFNIAKPPFDTRECQQRGLTYAAAVRAKLQMIIYDRESPQAKTVK
EIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGLNPEQILANFFVFDNFRLMDS
GAQMEFVSERLRGEVARFDITDKSGNVIVEKDKRITARHTRALEQSGTQFITVPEDFLVG
RVLAKNMVDPETGEIIAKANDELTETLLKKLRNAGIKEIQCLYTNELDQGAYISQTLASD
ETADQLAARVAIYRMMRPGEPPTEDAVEALFNRLFYSADTYDLSRVGRMKFNARVGRDDP
TGPMTLSNEDILDVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLARIEKA
VKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETPYRRV
NDGKVTDQIDYLSAIEEGKYVIAQANASLDAEGKLVDELVSAREKGESVLTSPERIQYMD
VAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKAFVGTGVERVAAVDSGT
VVAAKRGGVVDYVDTNRIVIRVNDDETAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKRG
DSVASGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHIE
ELVVMARDTKLGPEEITRDIPNLSEHQLSRLDESGIVYIGAEVQAGDVLVGKVTPKGETT
LTPEEKLLRAIFGEKASDVKDTSLRVEQGTAGTVIDVQVFTREGIQRDKRAQQIIDDELK
RFRLDLNDQLRIVEADAFDRIEKLLTNKLANGGPKKLAKGATIDKAYLADVEKYHWFDIR
PADEDVANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAG
KGIGQRIGDMLQQHTRVQELRKFFDELYNKSGGKTESIEELTDDEIVEMAENLAKGVPFA
TPVFDGAAEEEIRGMLKLAYPDEIAKVKGLTDTRTQATLHDGRTGDAFERPVTVGYMHVL
KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV
KSDDVNGRTKVYENIVKGEHAIDAGMPESFNVLVKEIRSLGIDIELERN
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatacctacaccgaacgcaagcgcattcgcaaaagcttcggcaagcgcgaaagc
gtcctcaacgtcccttacctcctgaccatgcagaaggactcgtatgtcgccttcttgcag
caggatgtccctccacaaaaacgcaagaacgaaggcctacaggctgcgttcctgtccgcg
ttcccgatcgtgtcgcacaacgggttcgtggagatgaagttcatcgaattcaacatcgcc
aagcctccgttcgacacccgcgagtgccagcagcgcgggctgacgtacgccgccgcggtg
cgggcgaaactccagatgatcatctatgaccgcgagtcgccgcaggcgaaaacggtcaag
gagatcaaggagcaagaggtctacatgggcgaagtgcccctgatgaccgactacggctcg
tttatcgtcaacggtaccgaacgcgtcatcgtgtcgcagctgcaccgttcgcccggcgtg
ttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctgttcagcgcgcgc
atcatcccctaccgcggctcgtggctcgacttcgagttcgacccgaaggacatcctgttc
ttccgtgtcgaccggcgccgcaagatgcccgtcacgatcctgctgaaggcgatcggcctg
aatcccgagcagatcctggcgaacttcttcgtgttcgacaacttccgcctgatggattcg
ggcgcgcagatggagttcgtctccgagcgtctgcgcggtgaagtggcacgtttcgacatc
accgacaagtcgggcaacgtgatcgtcgagaaggacaagcgcatcaccgcacgtcacacg
cgtgcgctggagcagtcgggcacccagttcatcaccgtccccgaagactttctggtcggc
cgtgtgctggccaagaacatggtcgacccggagaccggcgagatcatcgccaaggccaac
gatgagctgaccgaaacgctgctgaagaagctgcgcaacgccggcatcaaagagatccag
tgcctctacaccaacgagctggatcagggcgcctacatctcgcaaacgctggccagcgac
gaaaccgctgaccagctggcggcgcgcgtggccatctaccgcatgatgcgccccggcgag
ccgccgacggaagacgctgtcgaagcgctcttcaaccgcttgttctacagcgccgacacc
tatgacctgtcgcgcgtgggccggatgaagttcaacgcgcgtgtcggtcgcgacgacccg
accgggccgatgacgctgtcgaacgaggacatcctcgacgtcgtcaagatcctggtcgac
ttgcgcaacggccgcggcgaagtggacgacatcgaccacctcggcaaccgccgtgtgcgt
tgtgttggcgagctggccgaaaaccagtaccgctcgggcttggcgcgtatcgagaaggcc
gtcaaggagcgtttgggccaggccgagaccgaagccctgatgccgcacgacctgatcaac
tccaagccgatttccgcggcgctgaaggagttcttcggtgcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtccgagatcacgcacaagcgtcgtgtctcggccctgggc
ccgggcggtctgacccgcgagcgtgccggcttcgaggtgcgcgacgtgcacccgacccac
tatggccgcgtgtgcccgatcgaaacgccggaaggcccgaacatcggtctgatcaactcg
ctggccctctacgcgcagctgaacgaatacggcttcctcgagacgccgtatcgccgcgtg
aacgacggcaaggtgaccgaccagatcgactacctgtcggccatcgaggaaggcaagtac
gtgatcgcccaggccaacgcgtcgctcgacgccgaaggcaagctggtcgacgaactggtg
tcggcccgtgagaagggcgagtcggtgctgacctcgccggagcgcatccagtacatggac
gtggcgccgacgcagatcgtgtcggtggccgcttcgctggtgccgttcctcgagcacgat
gacgcgaaccgcgcactgatgggcgccaacatgcagcgccaggccgtgccgacgctgcgc
cccgaaaaggcctttgtcggcaccggcgtcgagcgcgttgccgcggtcgactcgggcacg
gtcgtggccgccaagcgcggcggtgtggtcgactacgtcgacaccaaccgcatcgtgatc
cgcgtcaacgacgacgaaacggcagcgggcgaagtcggcgtggacatctacaacctgatc
aagtatcagcggtccaaccagaacaccaacatccaccagcgcccgatcgtcaagcgcggt
gactcggtggcgtccggcgacgtgatcgccgacggcgcttccaccgacctgggcgagctc
gcgctcggccagaacatgttggtcgccttcatgccctggaacggctacaacttcgaagac
tcgatcctgatcagcgaacgtgtcgtcgccgaagaccgctacacctcgatccacatcgag
gaactggtggtgatggcgcgcgacaccaagctcgggcccgaggaaatcacgcgcgacatt
cccaacctgtcggagcatcagctgtcccgcctcgacgagtcgggcatcgtctacatcggg
gccgaagtgcaggccggtgacgtgctggtcggcaaggtcacgcccaagggcgagaccacg
ctgacgccggaagagaagctgctgcgtgcgatcttcggcgagaaggcgtccgacgtgaag
gacacctcgctgcgtgtcgagcagggcacggccggcaccgtcatcgacgtgcaggtcttc
acccgcgaaggcatccagcgcgacaagcgcgcccagcagatcatcgacgacgagctgaag
cgcttccgcctcgacctgaacgaccagctgcgcatcgtcgaggccgacgccttcgaccgt
atcgaaaagctgctgaccaacaagctcgccaatggcggcccgaagaagttggccaagggt
gcgaccatcgacaaggcctatctggccgacgtcgagaagtaccactggttcgacatccgc
ccggccgacgaagacgtggccaaccagctcgagagcatcaagaactcgctggagcagacg
cgccacagcttcgacctcgcgttcgaagaaaagcgcaagaagctcacgcagggcgacgag
ctgccggctggcgtgctgaagatggtcaaggtctacctggccgtgaagcgccgcctgcag
cctggcgacaagatggccggccgccacggcaacaagggtgtggtgtccaagatcgtcccg
gtcgaagacatgccctacatggctgacggcacccctgccgacatcgtgctcaacccgctg
ggcgtgccctcgcggatgaacgtcggccaggtgctcgaagtgcacctgggctgggccggc
aagggcatcggccagcgcatcggcgacatgctgcagcagcacacccgcgtacaggaactg
cgcaagttcttcgacgagctctacaacaagtcgggcggcaagaccgagagcatcgaagag
ctgaccgatgacgagatcgtcgagatggcggagaaccttgccaagggtgtgccgttcgcg
accccagtgttcgacggcgcggccgaagaggaaatccgcggcatgctgaagctggcttat
ccggacgagatcgccaaggtcaaggggctaaccgacacccggacgcaggccaccctgcac
gacggccgcaccggcgacgccttcgagcgcccggtcacggtgggctacatgcacgtgctg
aaactgcaccacctggtcgacgacaagatgcacgcccgttcgaccggcccgtactcgctc
gtcacgcagcagccgctgggtggtaaggcgcagttcggtggccagcgcttcggtgagatg
gaggtgtgggcgttggaagcctacggtgcctcctacgtgctgcaggaaatgctgaccgtg
aagtccgacgacgtgaacggccgtaccaaggtgtacgaaaacatcgtcaagggcgaacac
gcgatcgacgccggcatgccggagtcgttcaacgtgctggtcaaggaaattcgttcgctc
ggcatcgacatcgagctcgagcgcaactaa
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