Paracoccidioides brasiliensis: PADG_04239
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Entry
PADG_04239 CDS
T03549
Name
(RefSeq) SKI complex subunit tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
pbn
Paracoccidioides brasiliensis
Pathway
pbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PADG_04239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbn03019
]
PADG_04239
Messenger RNA biogenesis [BR:
pbn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
PADG_04239
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_22
TPR_16
TPR_1
TPR_8
TPR_19
TPR_CcmH_CycH
TPR_14
TPR_12
TPR_17
TPR_11
TPR_6
ARM_TT21_5th
TPR_7
TPR_Slam
ARM_TT21_N
BTAD
Coatomer_E
RPN7
Motif
Other DBs
NCBI-GeneID:
22583404
NCBI-ProteinID:
XP_010759376
UniProt:
C1GAF3
LinkDB
All DBs
Position
Unknown
AA seq
1414 aa
AA seq
DB search
MSTKAALKSIRTSLDSGDFEQAAGKAREFCDKEPKNYHAHVFFGLALYKLNDIEGAEASY
RKAISIKDDDRTAWQGLLTLYENQGGKSLDQYRKAVTRLCQILSAADEKAKCQAAVQKYV
TLARKLGSKLQYKQALELQLPTSFLYDILEGTVPHPSQIYLRIIELCEAEEKEFINKEIG
ERRTRLGARIDQVTLEVKREAFQRSDLDNFYREIINWSHDDEVRRNYEEKLLQRAYDFLQ
VLPTGKKNEKREEVLRLAREMVIIKHPFLLAWKIVLEWQDADDLAELDLNMLQDFLTLFP
KEGLSKVLSGFFESDISPFPKTLKSDEEKQDDLDKTDSNDPNSPITSGDRLLLMAEGLEQ
CPDSILAHRIMGQFYLSLDEFQTTVDVSRRGIAVITDVQCTTGLKLRNVADAVNITLANA
LITYQSPKNHPEAKQIFEDILKRRPTFTSCLLGIGLILEEDQDYTSAVDFLEQALERDPT
NIKVKSELFWCKTHNGELQLGLDGLEETLAMIKSTGTRNQALKAEILYRIGYCQWELDPS
PAARKDRTKAYASFLGSIQSNMNYAPAYSSLGIYYADYKKDRQRARRCFHKAFELSPAEI
DSAERLARDFADQGAWDIVEAISQRIVDSGRAKPSPGSKRKGHSWPYAALGVVEISKQQY
QKSIGAFQSALRISPLDYQSWVGLAESYHNSGRYIAATKAFEHAEALEINLPISERGQVW
YAKYMLANVKRELREYNEAITRYETVLKIKPDEFGVSIALLQTLTENAWKCVTLGLFGEA
ADCARKAIRTGMSIAKRHPDAFNLWKSIADAFSTFSWIRGKASCMPITEYKKFIESQTDV
ASFELLADEDGVRTDFVSLLTKSSSGDDFSPNICIHAAILAHKRAVSISASDKHAQAIAW
YNLGWAEYRAYVCLEDDVKSKTNKPFLKTAMRCFKRAIELEAGNSEFWNALGVVTTFLSP
KVAQHSFVRSLHLNDRSPQVWTNLGALYLLHNDHELANEAFTRAQSTDPDFAHPWLGQGL
LALLFGDVTEARELFTHAFELGNSALTFPKRQYAVSVFDYLNSDSTMNVELQQLIQPLLA
LHQLRVQSPSNLPFQHLSALLAERMGSYTAANSSLENVCTALETEYKSSESTSSLSRFVQ
AKADAARVQLALMDYKAAAESAETALSLSSEGGIDEFYPELNQKLQLSSHLTAGLAYFYL
EDMDRAIDMFRDALQEAKSSPDVVCLLAQVLWAKGGEEERDAARVQLLDCIEKHPTHVGA
VTLLGVIALLDADEDAIKAVESDLQEMRISDVGIHDRVKITKLLAGIVRLGLAKQSDRTK
ELSQCQEAKTSVMLAPYQPQGWAALSAASSEPYPAEMALQTALQNIPPKGTLDASELCKY
YAHSGHRDAAVRAIMIAPWVSDGWKALFHCISES
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaaaggcagccctgaagtctattcggacctctttggattctggagacttcgag
caggccgctgggaaagcgagagagttttgcgataaagagccgaagaactatcatgcacac
gtgttcttcggacttgcgctttataaattaaatgatatcgagggggcggaggcttcatat
cgaaaggcaatttcaattaaggacgatgacagaacagcttggcagggcttactgacgttg
tatgaaaaccaaggtgggaagtctttggatcagtatcgcaaagcggtgacaagactatgt
cagatactatctgctgccgatgagaaagctaaatgccaagctgccgtccagaaatatgtt
acgctggctaggaaacttggttctaagttgcaatacaaacaggctttagagcttcaacta
cccactagctttctgtatgatattctcgagggcaccgtccctcatccatcccagatatat
cttcgtataatagagttatgcgaagccgaagaaaaggagtttatcaacaaagaaattggt
gagaggcggactagattaggtgcccgaattgaccaggtgactctggaagtgaaacgtgag
gccttccaacgaagtgacttggataatttctaccgtgagattatcaattggtcccatgat
gatgaagttcgccggaactatgaggaaaagctgttgcagcgggcttatgactttcttcaa
gtgctccccactgggaaaaaaaatgaaaagcgtgaagaagtactgcgtcttgcgcgggaa
atggtcattatcaagcatccatttcttcttgcttggaagattgttttggagtggcaagac
gcagatgatctcgcagagttagatctcaacatgctacaggattttctaacattattccct
aaggagggtttaagcaaagtactaagtggattttttgaaagtgatatctctccgtttccc
aaaacactgaagtcggatgaagagaaacaggatgacctagacaaaaccgactcaaacgat
cccaacagtccaattacttctggagaccgcctgctattgatggcagagggattagaacaa
tgtcctgattcaattcttgctcacaggattatggggcagttctatctgtcgctagacgag
ttccagacaactgttgacgtctctcgcagaggtatagctgtcattacagatgttcaatgt
acaactggactaaagctgcgcaatgtcgccgacgcagtgaatattactcttgccaacgct
ttaatcacataccaatcaccaaagaaccacccggaagcaaaacagatatttgaagacata
ttgaagcgcagacctacgttcactagttgtcttcttgggattggcctaattctagaagag
gatcaggattacaccagcgcagtggactttctagaacaggcattggaacgtgaccctact
aatattaaagtaaaaagtgaattgttctggtgcaaaactcataatggagagctccagcta
ggattagatggtttggaagaaactctagccatgatcaaatcaacaggtacgcgaaaccag
gctctcaaagcggagattttgtaccggatcggatattgtcagtgggaactagatccttca
cccgcggctaggaaagatcgcaccaaggcctacgccagttttctcggttccatacagtct
aatatgaattatgcaccagcttacagcagccttggaatatattatgcagactacaagaag
gaccgacaacgagcgcgccgctgcttccataaagctttcgagctttcccctgccgagata
gattctgcagagcgtctagccagggattttgcagaccagggagcctgggatattgtcgaa
gcaatctctcaaagaattgtggattcaggaagagcgaaaccttccccgggctcgaaacgc
aagggccatagctggccgtatgcagcccttggtgtggtagaaataagcaaacaacaatat
cagaaaagtataggggcattccagtcagcgttacgaatatccccactcgattaccagtcc
tgggtcgggctggctgaaagctaccacaactctggtcgttatatcgcagccacgaaggcg
tttgagcatgcagaggcattagagatcaatcttccaatatctgagaggggtcaagtttgg
tatgcgaagtatatgcttgcaaacgtgaagagagagctaagggaatacaatgaagcaatt
acgagatacgaaacagttctgaaaataaagcctgacgaatttggtgtctcgatcgcactt
ctgcagactctcactgaaaatgcgtggaagtgtgtcacgttggggttgttcggtgaagcg
gctgactgtgcgaggaaggctatcagaacgggcatgtcaatcgcaaagcgccatcccgat
gcgttcaacttatggaagtcaattgccgatgcgttctccaccttctcctggattcgggga
aaggcatcctgcatgcctatcacagagtacaaaaagtttattgaaagtcaaactgatgtg
gcatccttcgagttgctcgcagatgaagatggtgtgaggacagactttgtttcgctgctt
acaaagtcgagctccggagatgatttttcaccaaacatatgtatccatgctgcgattctt
gctcacaaacgtgccgtgtccatatccgctagtgacaaacacgcacaggcaatagcatgg
tataatctcggatgggcagaatatcgtgcatacgtatgcttggaagatgatgttaagtcg
aaaacaaacaaacctttcctcaaaacagccatgcggtgtttcaaacgagcaatcgaactt
gaggctggcaattctgagttttggaatgcgcttggagtagtgacaacgttccttagcccg
aaagtcgcccaacattcgtttgtcagaagtctccatttaaacgatagaagtcctcaagtg
tggacgaatttaggtgcgttgtaccttcttcataatgaccatgagcttgcgaacgaggcg
tttacgagggctcagtcaacggatccggactttgcccatccgtggctcggacagggcttg
cttgcactactatttggagacgtaacggaggccagagaactctttacgcacgcttttgaa
ctaggaaattcagcattgacgttcccgaaaaggcagtatgcagtatcagtctttgattac
ctaaactccgattccacgatgaatgtagagcttcaacaactcattcaaccccttcttgca
ctccaccaactccgtgtccaatcaccctccaacctcccatttcaacatctttcagccctg
ttggctgagagaatgggaagctataccgctgctaattcgagccttgaaaatgtgtgcacc
gctttagaaacagagtataaatcatcagagtcaacgtcgtcattatcacgctttgttcag
gcaaaagcagatgcagctcgggtacagctagctctgatggactataaagctgctgctgaa
agtgctgagactgctctaagcctatcatccgagggtggcatagatgagttttaccctgaa
cttaatcaaaagctacaactctcatctcatctgacagccggactggcttacttctatctc
gaagacatggacagggcaattgacatgttccgcgatgctttgcaggaagcaaagagctca
cctgatgtagtatgtttactggcacaagtcttgtgggctaagggtggggaagaggagaga
gacgcagctcgggtgcaacttttggattgtatcgaaaagcaccctacacatgttggcgcg
gttactcttttgggtgtcatagctttattggatgctgatgaggatgcaatcaaagcagtc
gaatctgacttgcaagaaatgcgaataagtgatgttggcatccacgatcgggtgaaaatc
actaaactcctcgcaggaattgtcagacttggacttgcaaagcagtctgatagaacaaaa
gagctgagccagtgtcaagaagctaaaacatccgtaatgcttgcaccataccagccacag
ggatgggctgcactgtccgcagcgtcttctgagccatacccagctgaaatggcattacaa
actgcactccaaaatataccccccaagggaacacttgatgcatcggagctttgtaaatac
tacgcccattctgggcatagagatgctgcagtcagagccataatgatagctccttgggta
tcagatggctggaaagcacttttccactgtatatcagagtcataa
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integrated database retrieval system
