Acidipropionibacterium acidipropionici ATCC 4875: PACID_25920
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Entry
PACID_25920 CDS
T02345
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pbo
Acidipropionibacterium acidipropionici ATCC 4875
Pathway
pbo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PACID_25920 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbo03021
]
PACID_25920 (rpoB)
03400 DNA repair and recombination proteins [BR:
pbo03400
]
PACID_25920 (rpoB)
Enzymes [BR:
pbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PACID_25920 (rpoB)
Transcription machinery [BR:
pbo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PACID_25920 (rpoB)
DNA repair and recombination proteins [BR:
pbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PACID_25920 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AFV90368
UniProt:
K7RZE3
LinkDB
All DBs
Position
complement(2728838..2732320)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAATRTASKNTNVISPQSGRISFAKIQEPLEVPNLLDLQVESFNWLVGNDIWQSHVDEAL
AEGRTDINTKSGLEEIFEEISPIEDYSETMSLSFRDHRFEDPKHSVDECKDRDTTYAAPL
FVTAEFTNNETGEIKSQTVFIGDFPLMTSKGTFIVNGTERVVVSQLVRSPGVYFERTADK
TSDKDIYTCKVIPSRGAWLEFEIDKRDTVGVRLDRKRKQNVTVFLKALGWTPDRILEEFG
QYESIRQTLEKDHGVETQDQALLDIYKKLRPGEPPARDAAQQLLENYYFNGKRYDLAKVG
RYKINKKLGLDLPFDTQVLTIDDIVAAIHYICALHEGLETLPREGRDDIFVEPDDIDHFG
NRRLRTVGELIQNQLRTGLGRMERVVRDRMTTQDIEAITPQTLINIRPVTAAIKEFFGTS
QLSQFMDQNNPLAEMTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASFARVNAFGFIETPYRKVIDGQVTDDVHYLTADEEDRFIIAQANAPLTDDGHF
SNERVLVRKRHGDPDEVPPAEIDYMDVSPRQMVSVASALIPFLEHDDASRALMGANMQRQ
AVPLIKTEAPLVGTGMEYRCATDVGEVTLAEKPGTVLSVSADLVDIACDDGTYQTYKLEK
FRRSNAGTCINQRPVVKAGQRVEVGTPLADGPSTDQGELALGRNVLTAFMPWQGLNYEDA
IVLSERIVQDDVLTSIHIEEHEVDARDTKLGAEEITRDIPNVSDDMLANLDENGIVRIGA
EVGTGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEEGTVIGVRIFD
ADEGDELAPGVNQMVRVYVAQKRKISVGDKLSGRHGNKGVISKILPIEDMPFMEDGTPVD
MVLNPLGVPSRMNVGQVLEMHLGWIAHSGWDITQAEGDWAERLRDVGLAQVEPDSRLATP
VFDGAKEHEITGLLTNGVPDRDGNHLVDPDGKATLYDGRTGEPFPKKVGVGYMYELKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAWALQELLTIKSDD
VPGRVKVYEAIVKGENIPEPGIPESFKVLVKEMKSLCLNVEVLNSDGMEIDLRESEEDMR
PSGLGIDLSRRPGSDNALAE
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggccgccacgcgcaccgcgtcgaagaacaccaacgtcatctcgccccagagcgggcga
atctcattcgccaagatccaggagccgttggaggtgccgaacctgctcgacctgcaggtc
gagtccttcaactggctcgtcggtaatgatatctggcagtcccacgtcgacgaggccctg
gccgagggtcgcaccgacatcaacaccaagtcgggactggaggagatcttcgaggagatc
tccccgatcgaggactactcggagacgatgtcgctgtcgttccgggatcaccggttcgag
gatcccaagcactcggtcgacgagtgcaaggaccgcgacaccacctacgccgcgccgctc
ttcgtgaccgccgagttcaccaacaacgagaccggtgagatcaagtcccagacggtcttc
atcggcgacttcccgctgatgacctcgaagggcaccttcatcgtcaacggcaccgagcgc
gtcgtcgtctcccagctggtgcgttccccgggcgtctacttcgagcgcaccgccgacaag
acctccgacaaggacatctacacctgcaaggtgatcccgagccgcggcgcctggctggag
ttcgagatcgacaagcgcgacaccgtcggcgtccgcctcgaccgcaagcgcaagcagaac
gtcaccgtcttcctcaaggccctgggctggaccccggaccgcatcctcgaggagttcggc
cagtacgagtcgatccgccagaccctcgagaaggatcacggcgtcgagacccaggaccag
gctctcctcgacatctacaagaagctgcgccccggtgagccgccggcccgcgacgccgcc
cagcagctcctcgagaactactacttcaacggcaagcgctacgacctggccaaggtgggt
cgttacaagatcaacaagaagctgggcctggacctgcccttcgacacccaggtgctgacc
atcgacgacatcgtcgcggccatccactacatctgcgccctgcacgagggcctggagacc
ctgccgcgcgagggccgtgacgacatcttcgtcgagcccgacgacatcgaccacttcggc
aaccgtcgtctccgcaccgtcggcgagctcatccagaaccagctgcgcaccggcctgggc
cggatggagcgcgtggtgcgcgaccggatgaccacccaggacatcgaggccatcaccccg
cagaccctcatcaacatccggccggtgaccgcggccatcaaggagttcttcgggacctcc
cagctgtcgcagttcatggaccagaacaacccgctggccgagatgacccacaagcgccgc
ctgtcggccctgggccccggcggtctgtcccgcgaccgggccggcatggaggtccgcgac
gtccacccgtcgcactacggccgcatgtgcccgatcgagacccctgagggtccgaacatc
ggcctcatcggttcgctggcctccttcgcccgggtcaatgccttcggcttcatcgagacc
ccttaccgcaaggtgatcgacggccaggtgaccgacgacgtccactacctcaccgccgat
gaggaggaccgcttcatcatcgcccaggcgaacgccccgttgaccgacgacggccacttc
tccaacgagcgggttctggtgcgcaagcgtcacggcgaccccgatgaggtgccgccagcc
gagatcgactacatggacgtctccccgcgccagatggtgtcggtggcctccgcgctgatc
cccttcctcgagcacgacgacgcgtcgcgggccctgatgggcgccaacatgcagcgtcag
gcggtgccgctcatcaagaccgaggctcctctggtcggcaccggcatggagtaccgctgc
gccaccgacgtcggcgaggtcaccctggccgagaagcccggcactgtgctgtcggtctcc
gcggacctcgtcgacatcgcctgcgacgacggcacctaccagacctacaagctggagaag
ttccgccgctccaatgccggcacctgcatcaaccagcgcccggtcgtcaaggccggtcag
cgcgtcgaggtcggcaccccgctggccgacggcccgtcgaccgatcagggcgagctggcc
ctgggccgcaacgtgctcaccgccttcatgccctggcagggcctgaactacgaggacgcc
atcgtgctgtccgagcgcatcgtccaggacgacgtgctcacctcgatccacatcgaggag
cacgaggtggacgcccgcgacaccaagctcggtgccgaggagatcactcgggacatcccg
aacgtctccgacgacatgctggccaatctcgacgagaacggcatcgtgcgcatcggcgcc
gaggtcggcaccggcgacatcctggtcggcaaggtcaccccgaagggcgagaccgagctc
actcccgaggagcgcctgctgcgtgccatcttcggcgagaaggcccgcgaggtccgcgac
acctccctcaaggtgccccacggcgaggagggcaccgtcatcggcgtgcgcatcttcgac
gccgatgagggcgacgagctggcccccggcgtcaaccagatggtgcgggtctacgtggcc
cagaagcgcaagatctcggtcggcgacaagctgtcgggacgccatggcaacaagggcgtc
atctccaagatcctgccgatcgaggacatgcccttcatggaggacggcaccccggtcgac
atggtcctcaacccgctgggcgtgccctcccggatgaacgtcggccaggtgctcgagatg
cacctcggctggatcgcccactccggctgggacatcacccaggccgagggggactgggcc
gagaggctgcgcgacgtcggcctggcacaggtggagcccgactcgaggctggccaccccg
gtcttcgacggcgccaaggagcacgagatcaccgggctgctcaccaacggcgtcccggac
cgcgacggcaaccacctggtggaccccgacggcaaggcgaccctctatgacggccgcacc
ggcgagcccttccccaagaaggtcggagtgggctacatgtacgagctcaagctgcaccac
ctggtcgacgacaagatccacgcccgctcgaccggcccgtactcgatgatcacccagcag
ccgctgggcggcaaggcgcagttcggcggccagcgcttcggcgagatggaggtctgggcg
atggaggcctacggcgccgcctgggccctccaggagctgctgaccatcaagtcggacgac
gtccccggccgcgtgaaggtctacgaggccatcgtcaagggggagaacatccccgagccc
ggcatccccgagtccttcaaggtgctcgtcaaggagatgaagtcgctgtgcctgaacgtc
gaggtgctcaactccgacggcatggagatcgacctgcgggagtccgaggaggacatgcgc
ccctccggcctgggtatcgacctgtcgcgtcgacccggctctgacaacgccctggccgag
tga
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