Pectobacterium brasiliense: B5S52_20750
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Entry
B5S52_20750 CDS
T06364
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B5S52_20750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbra03021
]
B5S52_20750
03400 DNA repair and recombination proteins [BR:
pbra03400
]
B5S52_20750
Enzymes [BR:
pbra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B5S52_20750
Transcription machinery [BR:
pbra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B5S52_20750
DNA repair and recombination proteins [BR:
pbra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B5S52_20750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
ARA78170
UniProt:
A0A433MZG4
LinkDB
All DBs
Position
complement(4629924..4633952)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEINGNKLQMD
LVPERLRGETASFDIEANGKVYIEKGRRITARHIRQLEKDGIERIEVPVEYIAGKVLSKD
YIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETVRVDPSNDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDNVVT
DEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGVEADKLDKLPRERWLELGLTDEDKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQHEEVTK
LREFIQRAYDLGDDVRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacag
gttttggacataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagacccggaaggtcagtacggtttggaagctgcattccgttctgttttccctataaaa
agctatagcggtaattcagagctgcaatacgttagctatcgcttgggcgagccagtattt
gacgttaaagaatgtcagatccgtggcgtgacgttctctgcgccgctacgcgtaaaactg
cgcctggtgatctacgagcgcgaagcgcctgaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggcgaaattccgctcatgaccgataacggtaccttcgtgatcaacggt
actgagcgtgtaatcgtgtctcagttacaccgtagtccaggtgtgttcttcgatagcgac
aaaggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggctggatttcgagtttgatccgaaggataacctgtttgtccgtatcgaccgt
cgtcgcaaattgcctgcgaccattatcctgcgcgcgctgggttattccaccgaacagatt
ctcgatcttttcttcgataaaattgtctatgaaatcaatggcaataagttgcagatggat
ctggttcctgagcgtctgcgtggtgaaaccgcatcgtttgatattgaagcgaacggtaaa
gtttatatcgaaaaaggtcgccgcatcactgcgcgtcatatccgtcagttagagaaagac
ggcattgagcgcattgaagtgcctgttgaatatatcgctggcaaagtactgtccaaagat
tatatcgacgagagcaccggtgaactgatcggcgcagccaacatggagctgtcgctggat
ctgctggctaaactgagccagtctggtcacaaacgtattgagacactgttcaccaatgac
cttgatcatggtgcatacatgtctgaaaccgtgcgcgtcgatccgtcaaacgatcgtctg
agtgcgctggttgaaatctatcgcatgatgcgtcctggtgagccgccaacgcgtgaagca
gcagaaacgctgtttgagaatctgttcttctctgaagaccgctatgatctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgctacgtgatgagatcgaaggttccggtatcctg
agcaaagatgacatcatcgaagtgatgaagaagctcattgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgtcggcgaaatggca
gaaaaccaattccgcgttggtctggtgcgtgtagaacgtgctgtaaaagagcgtctgtct
ctgggcgacctcgatacgctgatgccacaggacatgatcaacgccaagccgatttcggct
gccgttaaagagttcttcggttcaagtcagctgtcacagtttatggaccagaacaaccca
ctgtccgagattacgcacaagcgtcgtatctctgcattgggcccaggcggtctgacgcgt
gagcgtgctggctttgaagttcgtgacgtacacccgactcactacggccgcgtttgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtttatgcgcaa
acgaacgaatacggtttccttgaaaccccgtatcgtcgcgtgcgtgacaacgtggtgacg
gatgagatccattacctgtctgcgattgaagaaggtaacttcgttatcgcacaggcgaac
accaatttggacgaagaaggccgcttcatcgacgaactggttacctgccgtaacaaaggc
gagtccagcttgttcagccgcgatcaggttgaatacatggacgtttccacacagcaggtg
gtttccgtcggtgcatccctgattccgttcctggaacacgatgacgccaaccgcgccctg
atgggtgcgaacatgcaacgtcaggccgttccgactctgcgcgctgataagccgctggtt
ggtaccggtatggaacgcgctgttgcggttgactccggtgtaactgccgtagccaaacgt
ggtggtacagtacagtacgtggatgcatcccgtattgtaatccgcgttaatgacgatgaa
atgtatccgggcgaagccgggatcgacatctataacctgaccaaatatacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtgtctctgggtgagccggtagaacgtggc
gacgttctggcagatggcccgtcaaccgatctgggtgaactggcgctgggtcagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtttccgag
cgtgtggttcaggaagatcgctttacgaccatccacatccaggaactggcctgtgtgtct
cgtgacaccaagttagggcctgaagagattactgcggacatcccgaacgtgggtgaagca
gcactttccaaactggatgagtcgggcattgtttacatcggtgctgaagtgaccggtggt
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacgattatcgacgtacaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctgaagcaggcgaagaaagacctg
actgaagaattgcagattctggaggcgggcctgtttgcacgtatccacgctgtgctggtt
tccggcggcgtagaagccgacaaactggacaaactgccgcgcgagcgctggttggaactg
ggtctgactgatgaagataaacagaatcagttggaacagctggcagaacagtatgatgag
ctgaagcatgagtttgagaaaaaactcgaagctaagcgccgtaaaatcactcagggcgat
gatctggcaccaggcgtgctgaaaatcgttaaggtttatctggccgttaaacgtcagatc
caaccgggtgacaaaatggcaggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggcgtaccttcacgtatgaacattggtcagattctggaaacccacctgggtatggct
gcaaaaggtatcggcgagaaaatcaacgccatgctcaagcagcacgaagaagtgactaaa
ctgcgtgagttcatccagagagcctatgacctgggcgatgatgtgcgtcaaaaagtcgac
ctgagcactttctcagacgaagaagttatgcgtctggctgaaaacctgaagaaaggtatg
ccaattgcaacgccggtattcgacggtgcaaaagagaaagaaatcaaggaactgttgcag
atgggcggtatccctacctccggtcagattaccctgtacgatggacgtaccggtgagcaa
tttgagcgtcaggttacagtgggctacatgtacatgctgaaactgaaccacttggttgac
gataagatgcatgcccgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcacagttcggtggtcaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggtgcagcttataccctgcaagaaatgttgaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataaaaacatcgtggatggcaatcatcagatggaaccaggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctgggtatcaacatcgagctggaa
gaagagtaa
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