Fermentimonas caenicola: ING2E5B_1209
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Entry
ING2E5B_1209 CDS
T03818
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
pbt
Fermentimonas caenicola
Pathway
pbt02020
Two-component system
pbt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ING2E5B_1209
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ING2E5B_1209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbt03021
]
ING2E5B_1209
Transcription machinery [BR:
pbt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ING2E5B_1209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
SF3b1
Dimer_Tnp_hAT
Motif
Other DBs
NCBI-ProteinID:
CEA15959
UniProt:
A0A098BZ71
LinkDB
All DBs
Position
chrI:1323990..1325444
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AA seq
484 aa
AA seq
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MALRQQQELKQIQRLSPLQMQVIKLIELNNVEVEDRIKQEIEENPALETTDNDLSESSVI
DDEISEADNLTQDEMILGDYFSDDDIPDYRLNKSERKSDTDFFEINYYDDKSLHDYLFEQ
IGLMDLDSEKQTIAEYIIGNIDENGYLQRDLQSISNDLLFQQQLDVTPLQLEDILYEIQD
LDPAGIGARDLQECLLIQLGREKQSEEVEIATTIITDYFEEFSKKHYDKIIRLLNITQEK
LKDAIEVIISLNPKPGNTLGGTMQTAMNNITPDFIVDSYNGEVTIQLNNSNIPNLRVNRN
FSEMLKGYTDNKTSMSSDDKQAILFMKQKVDSAKWFIDAVRQRQNTLQRTMEAIVSIQYD
FFLTEDETMLKPMILKDVAEKTGFDISTISRVSNSKYVQTNTNIYPLKYFFSEAMQTVDG
EDISSREVKSILMESIENENSAKPLTDEQLTKILNSKGYVIARRTVAKYREQLNIPVARL
RKKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggctttaaggcagcaacaagaacttaaacagatacaacggctatcacctcttcagatg
caggtgattaagctgattgaacttaataatgttgaagtagaggatcggataaaacaggaa
attgaagaaaatccggcacttgaaacaactgataatgacctgtctgaaagttcagttatt
gatgatgaaatatccgaagcagataatttgacccaggatgaaatgattctgggtgattat
ttttcagatgatgatattcccgattacagacttaacaaatcagagagaaagagtgatact
gactttttcgagatcaactattatgatgataaatcattgcatgattatctgtttgaacaa
atcggactaatggatttggactcagaaaaacagacaatagctgagtatattataggcaat
attgatgaaaacggttatctgcaaagagatttgcaatctatttccaacgacctgcttttt
cagcaacagctggatgtaactcctctgcaacttgaggatatattatacgaaattcaggat
cttgacccggcaggtataggtgcacgtgatcttcaggaatgcctgctgatacaactcggt
cgagaaaaacaatctgaagaggttgaaattgcaaccactataattacggattatttcgag
gaattttccaaaaaacattacgataaaataatacgtctgctaaacatcactcaggaaaaa
ttaaaagatgcaattgaagtaattatttctcttaatccaaaaccgggaaatactcttgga
gggacaatgcagactgcaatgaataatattactcccgactttatagtcgattcgtataac
ggtgaagtgacaattcaactgaataacagcaatatacctaacctaagagttaatcgtaat
ttttcagaaatgctaaagggatatactgacaacaaaaccagtatgtcatcagatgataaa
caggcaatacttttcatgaagcagaaggtggattctgcaaaatggttcattgatgcagta
agacaaaggcaaaacactctgcaacgtacaatggaagcaatagtaagcattcagtatgat
ttctttctcactgaagatgaaactatgctaaaaccaatgattctaaaagatgtggctgaa
aaaaccggatttgatatttctactatttcaagagtcagtaacagcaaatatgtacagaca
aatactaatatttatccactgaaatattttttctctgaagcaatgcaaaccgtagatggc
gaagatatttcatcgagagaagtaaaatctatattaatggagagtatagaaaatgaaaat
tctgcaaaacctcttacagatgaacagcttacaaaaatacttaatagcaaaggctatgtt
attgcccgtagaactgttgcaaaatacagagaacaattaaatattcccgtggcacgtttg
agaaaaaaactttaa
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