Pseudoalteromonas sp. Bsw20308: D172_003575
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Entry
D172_003575 CDS
T04175
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03420
Nucleotide excision repair
pbw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D172_003575
03430 Mismatch repair
D172_003575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_003575
Enzymes [BR:
pbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D172_003575
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D172_003575
MMR (mismatch excision repair)
Other MMR factors
D172_003575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
AAA_11
Viral_helicase1
PhoH
DEAD
AAA_22
T2SSE
AAA_7
Bact_hydrolase
Motif
Other DBs
NCBI-ProteinID:
ALQ07219
LinkDB
All DBs
Position
831728..833755
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AA seq
675 aa
AA seq
DB search
MDSQITPQQQIQKCIAESMSFVLQGGAGSGKTETLKHTLQFLSQDYSKNRVACITHTNLA
VNEIIDRVGDGYKVSTIHSFLAALIKNHTKAIQQVIHEIFIVSNVEFETEENSDLAGNEL
KKANHDNYKRTYKKYAKLKYIVKGETSAKEIGKREYDKAPAEHNYELNLKIAELNAEVCN
VIKDKDHRNIKYNDSRFDRFKDLSFGHDSLLKVAALLFKRFPKLGRILSDKYDFVLIDEY
QDTNEEIIEVFLKYLPKERKTTVGLFGDSMQSIYSDGIGDVRAYIDSDQIVEIAKEDNFR
CSEQVIDFVNYLRIDALNQKLAFKIKQDGIKEILKDRQGHVSLLYAVWDNVKPHSKSSPE
TKQAYLDFIDKLIDFADGEERSHKKLMLTNKSIAGKVGFAGLYKVFSDRYTDVKDEIEKV
LSSIQVLDLAELCNAYSGSEKRYNFILSELKKSGFVLKTLREKERIVAAFEKITRGNLSI
NKTLEVAFKENILAKSEAHLAYVDRKEAFLSELKNDEEYQQLKMIFNAGSNSLTKMVKQV
PELTEEAFNEFHSNFKRERFYHDLFSEEISFSEINRYYKYLNEECDFITMHKTKGSGIEN
VLVVLDEYFWNKYSFKFSDDSTETSSVFTPPNMKLFYVACSRTIKNLTVVKVVTKEEKEH
LLKVFPEFEEVPINE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggatagccaaataacaccacagcaacaaattcaaaaatgtatagctgaaagcatgagt
tttgttttacagggaggtgcggggtctgggaagactgaaacgctaaaacatactctgcag
tttctatcacaagattactctaagaatagggttgcgtgtattacacacactaacttggca
gttaatgaaattattgaccgtgttggagatggctataaagtgtccactatacactcattt
cttgcggccttaattaagaatcatacaaaagcgattcagcaggttatacatgaaattttt
atagtttctaacgtagaatttgaaactgaggaaaattcagacctagctggtaatgaacta
aaaaaagctaaccatgataactacaagaggacttataaaaaatacgcaaagctaaaatat
atagttaaaggcgaaacttctgccaaagaaataggtaaaagagaatatgataaagctcct
gctgagcataattatgaactgaatttaaaaatagctgaattgaatgctgaagtctgtaat
gttatcaaagataaagatcatcgaaatatcaaatacaatgattcacgctttgataggttt
aaagatctatcatttgggcatgacagtttactcaaagttgccgctctactctttaaacgt
ttcccaaaactaggaaggattttaagtgataagtatgactttgttttaattgatgaatat
caagacacgaatgaagaaattattgaagtgtttttaaagtaccttccaaaagaaagaaaa
acgactgttggcttatttggtgattctatgcaaagtatttactctgatggtattggagat
gttcgcgcatacattgattcagatcagattgtcgagatagcaaaagaagataatttcaga
tgttcagagcaggtaattgactttgttaactacttgagaatagatgctctcaaccaaaaa
ctagcattcaaaattaaacaagatggcatcaaagaaatattaaaagataggcaaggacat
gttagcttgctttatgctgtctgggataatgtcaagcctcactctaagagctcccctgaa
acaaaacaggcatacctagatttcatcgataaattaatagattttgcagatggtgaagag
cgatcccataaaaagttaatgcttacaaataagtcaatagcaggcaaagttggctttgct
ggtttgtacaaagtgttttctgatagatatacggatgtcaaagatgagatcgaaaaagta
ctttcaagcattcaagtgcttgatctcgcagagttatgtaatgcctatagtggttcggaa
aaaaggtataactttatattatctgaacttaaaaagtcagggtttgtacttaaaaccctg
agagaaaaagagaggatagtggccgcattcgaaaaaataactagaggaaaccttagtata
aataaaactcttgaagtggcttttaaagaaaatattcttgctaagtcagaagctcatctg
gcttatgttgatcgtaaagaagcttttttatctgaattgaaaaatgatgaagagtatcaa
cagctcaaaatgattttcaatgcaggatctaatagcttaaccaaaatggtcaagcaagta
cctgaattaactgaagaagctttcaatgagttccatagtaacttcaaacgagaaaggttt
tatcatgatctgttctctgaagagatcagttttagtgagataaacagatattacaaatat
ctaaatgaggagtgtgatttcattacaatgcataaaactaaaggctcaggtattgagaac
gttttagttgtcttagatgagtacttttggaataagtacagttttaagttcagtgatgat
agtacagaaacctccagtgtatttacaccccctaacatgaagttgttttatgtagcgtgt
tctcgaacgataaaaaaccttacagttgtaaaagtggtaacaaaggaagaaaaggagcat
ctattaaaagtatttcctgaatttgaagaggttccaataaatgaatga
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