Pseudoalteromonas sp. Bsw20308: D172_020895
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Entry
D172_020895 CDS
T04175
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D172_020895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbw03019
]
D172_020895
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_020895
Enzymes [BR:
pbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D172_020895
Messenger RNA biogenesis [BR:
pbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D172_020895
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D172_020895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ALQ10522
LinkDB
All DBs
Position
pPBSW1:848838..850766
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AA seq
642 aa
AA seq
DB search
MTTPLIQSLEQHFGFSQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPNLT
LVVSPLLALMKDQISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKN
ERFREFISQVALSMLVVDEAHCISEWGHNFRPDYLKLPRYREELNIPLVLLLTATATKKV
KRDMAERFAISPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVRAQSGPGIVYVTLQQ
SAEQVANVLSAQGIHAVAYHAGLEDTLRWQIQDDFMAGKINVVVATIAFGMGVDKSDIRF
VIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGIEYVIN
DIRQSHQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQYAYYADFKYKFLVDKNE
LLSQFDQQRQVFLTQIFSHTDFKKIWGTLNFDSLTQAAQVDRKRVVAALDYLAEKNLITL
ETKRITQVYKVHGEVINNPELAQQLHDYFSDKEQAEIKRIAALVRFFELQSCLSYNLARY
FDDQNAPEQCGHCSVCRGHAVKLEYSIEPAYIDEQLIYQKVDEFLAHMAGKGNHNVGIET
QCRFLAGMSVPLFARNKVRQLSGFALCEQMRYSEIKATLLAR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgccattaattcagtcacttgaacaacattttggttttagccaatttagaaca
gggcagcaacaaactatagagcagcttttaaatggtcaatcgtcgttggctatatttccg
accggctcgggtaaatcgttgtgctaccaactcactgctttgcacttacctaatttaacc
ttagtggtttcacctttacttgcgttgatgaaagatcaaattagctttttaaatagcaaa
ggtatttatgctgccagccttgattcgagccaagatcaaatgcaaagcagcactgtaatg
aacgacgtgcgaaacggtaaaattaaagtattaatggtctcggttgagcgatttaaaaac
gaacgctttagagaatttataagccaagtggcgctttctatgctggtggtagacgaagcg
cactgtatatcagaatggggccataactttagacccgactaccttaaactgccacgttac
cgcgaagagcttaatattcctttagtgttgttgcttactgcaacggccacaaaaaaagta
aaacgcgatatggcagagcgatttgctatatcgcctgagtgcattgtacaaacgggcttt
taccgcgctaatttagatttaagcgtgttgagtgttaaaacagccgataaaaataccgag
cttaccaacattgtgcgcgcgcaaagtggccctggtattgtgtatgtaacgctacagcaa
agcgcagagcaagtcgctaatgtgctaagcgcgcaaggtattcacgctgttgcttaccat
gcagggcttgaagatacactacgctggcaaattcaagatgactttatggcgggtaaaatt
aacgtagtggtggctaccattgcctttggtatgggcgttgataagtcggacattcgcttt
gttatacattatgacttacctaaatcgatagaaaactacagccaagaaattggccgtgca
gggcgcgatggcaatccatcaaattgctacacccttgccaatttagatgggctaaatacg
gttgaaaactttgtatatggcgacaccccagagcttagcggtattgaatacgtaattaac
gatattcgccaaagccaccagcaatgggaaatgcaagagtacagcctttcaagcgaaagc
aatattaggcaactggcccttaaaaccttgctagtacaactagaaatgcaaggcgcaata
acgccacaatatgcctactatgccgattttaaatacaaatttttggttgataaaaacgag
ctactaagccagtttgaccagcagcgccaagtatttttaacacaaatatttagccatacc
gattttaaaaaaatatggggtacgctaaattttgactcccttacacaagccgcgcaggtt
gatcgaaaacgtgtagtggctgctcttgactacctagccgaaaaaaacctaataacgctt
gaaaccaaacgtattacccaagtatacaaagtgcatggagaggttataaacaaccctgaa
cttgcccagcaactgcacgactactttagcgataaagaacaggccgaaattaaacgtatt
gctgcactggttcgcttttttgagctacaaagttgcttaagctataacttagcgcgctat
tttgacgatcaaaatgcacctgagcaatgcgggcattgtagtgtgtgtagaggccatgcg
gttaagcttgaatactctatagagcctgcctatattgacgagcaacttatttatcaaaag
gtagatgagtttttagcgcatatggcaggtaaggggaatcataatgtgggtattgaaacc
caatgccgctttttagcggggatgagtgtgccgttatttgcgcgtaataaagtgcgccag
ctgagtggttttgcactgtgcgagcagatgcgttatagcgaaattaaagcaacacttctt
gctagatag
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