Pseudomonas cannabina pv. alisalensis: JGS08_02315
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Entry
JGS08_02315 CDS
T07379
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JGS08_02315 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcab03021
]
JGS08_02315 (rpoB)
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_02315 (rpoB)
Enzymes [BR:
pcab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JGS08_02315 (rpoB)
Transcription machinery [BR:
pcab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JGS08_02315 (rpoB)
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JGS08_02315 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QQN22578
LinkDB
All DBs
Position
495876..499949
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVRGEN
LSLELVPQRLRGEIAVLDILDDKGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEIIAECNTELNTEILGKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGLVTEEIVFLSAIEEADHVIAQASAAMNDKQELIDELVAVRHLNEFTVKAPADVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGRVAEGGAGLKKGQEITNEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVVELRKFLNEIYNEIGGRQESLEDLSDKEILDLAKNLRNGVPMATP
VFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtaatggatgtgccgtatctcttggccattcagctggattcgtatcgcgaattcctgcag
gcgggagcgaccaaagatcagttccgcgacgtcggtctgcatgcagccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtatgtaggttatcgcttgggc
gaaccggcatttgatgtcaaggaatgcgtgctgcgcggtgtgacttacgcagtacctctg
cgggtcaaggtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgaaaacggtaccttt
gtaatcaatggcaccgagcgcgttatcgtgtctcagctgcaccgttcgccaggcgtattc
ttcgaccacgaccgtggcaagacgcacagctccggtaagctgctttactccgctcgtatc
attccttaccgcggttcgtggctggacttcgagttcgatccgaaagactgcgtattcgtc
cgtatcgaccgtcgtcgcaagctgcctgcgtctgtacttctgcgcgcgctgggttacacc
accgagcaagtgctcgatgctttctacaccaccaacgtcttccatgtgcgcggcgaaaac
ctgagcctggaactggtgcctcagcgcctgcgtggtgaaattgccgttctggacatcctg
gacgacaagggcaaggtcattgtcgagcaaggtcgccgtatcactgcccgtcacatcaac
cagctggaaaaggccgggatcaaagagctggaagtacctctggactacgtcctgggccgt
acgactgccaaggtcatcgtgcatccggcaaccggcgagatcattgccgagtgcaacacc
gagctgaacactgaaatcctcggcaagatcgccaaggctcaggttgttcgcatcgaaacg
ctgtacaccaacgacatcgattgcggcccgttcgtttccgatacgttgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatatatcgcatgatgcgtcctggcgagcca
ccgaccaaggatgctgctgaaaccctgttcaacaacctgttcttcagcccagagcgctat
gacctgtctgctgtaggccggatgaagttcaaccgtcgtatcggtcgtaccgaaatcgaa
ggttcgggcgtgttgtgcaaggaagatatcgtcgcggttctcaagaccctcgttgatatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctcggtaaccgtcgcgttcgctgc
gtaggcgagatggccgagaaccagttccgtgtaggtctggtccgcgtcgagcgtgctgtc
aaagaacgtctgtccatggcggaaagcgaaggcctgatgcctcaggacctgatcaatgcc
aagcctgttgcggcagcggtcaaagagttcttcggttccagccagctttcccagttcatg
gaccagaacaacccgctttccgagattacccacaagcgtcgtgtttctgcactcggccct
ggcggtctgactcgtgagcgtgccggctttgaagttcgcgacgttcacccgactcactat
ggtcgtgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcccgcaccaaccagtacggtttcctcgagagcccgtaccgtgtggtgaag
gaaggtctggtcaccgaagaaatcgtgttcctttcggcgatcgaagaagctgaccacgtc
attgcccaggcttcggctgcaatgaacgacaagcaagagctgatcgacgagctggttgct
gtgcgtcacttgaacgaattcaccgtcaaggcgccagccgacgtcaccctgatggacgtt
tcgcccaagcaggttgtctcggtagcggcttcgctgatcccgttcctcgagcacgatgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccaaccttgcgtgcc
gacaagccgctcgtgggtaccggcatggagcgcaacgttgcccgcgattccggcgtttgc
gtcgtggcccgtcgtggtggcgtgatcgattcggttgatgccagccgtatcgttgttcgc
gtcgccgatgacgaagttgaaacaggtgaggcgggtgtagacatctacaacctgaccaaa
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtcagcaagggtgat
cgtgttcagcgcagcgacatcatggccgacggcccgtccaccgatatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcctggaacggtttcaacttcgaagactcc
atctgtctttccgagcgcgtggttcaggaagatcgcttcaccacaatccacattcaggaa
ctgacctgtgtggcgcgtgacaccaagcttgggcctgaggaaatcacagctgacatcccg
aacgtgggtgaagctgctctgaacaagctggacgaagccggtatcgtttatgtaggtgct
gaagttggtgctggcgacatcctggtgggcaaggtcactccgaaaggcgagacccagctg
acgccggaagaaaaactgttgcgcgcgatcttcggtgagaaggccagcgacgttaaagat
acctccctgcgcgtgccaaccggcaccaaaggcactgtcattgacgttcaggtcttcacc
cgtgatggcgtggagcgtgatgcgcgtgccctgtccatcgagaagtcgcaactcgacgag
atccgcaaggacctgaacgaagagttccgtattgtcgaaggcgctacctttgaacgtctg
cgctctgcgctggtgggtcgtgtagcagaaggcggtgccggcctgaagaaaggccaggaa
atcaccaatgaagtgctcgacggtcttgagcatggtcagtggttcaagctgcgtatggct
gaagatgctctgaacgagcagcttgagaaagcgcaggcttacatcgttgatcgtcgtcgt
cttctggatgacaagttcgaagacaaaaagcgcaagctgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcattcagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcacaccggtagatatcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgtgggccagattctcgaaactcaccttggcctcgccgccaaaggt
ctgggcgagaagatcaaccgcatgctcgaagagcagcgtaaagtggttgagctgcgcaag
ttcctgaacgagatctacaacgagatcggtggtcgccaggaaagtctggaagacctctcc
gacaaggagatcctcgatcttgcgaagaaccttcgcaacggtgtgccaatggctacaccg
gtgttcgacggtgctaaagaaagcgaaatcaaggcaatgctcaagctggcagatatgccg
gaaagcggccagatgcagctgtttgacggtcgtactggcaacaagtttgagcgcccggta
acggtcggctacatgtacatgctgaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcgtacagcctggttacccagcagccgctgggtggtaaggcccagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcgtac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaagaaatccgttcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
