Physeter macrocephalus (sperm whale): 114487015
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Entry
114487015 CDS
T06011
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114487015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
114487015
Enzymes [BR:
pcad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114487015
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114487015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
114487015
NCBI-ProteinID:
XP_028350534
UniProt:
A0A455BNL6
LinkDB
All DBs
Position
10:7815015..7824628
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AA seq
348 aa
AA seq
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MIHGWLNPQKQTADTEGKLVPIALSLLTTVPLGDRIHPPPASATTPAVPPRLQTPRVLTV
FWLFLHHVAAGTFCLALLSVHQTRSRVWSGFCHVLTAPGAVPTARVQVWERITLVFGAQA
LHRDLLGVNPSFASRWLSNVFYLSFFSNSDLNPTKNSGPVIIHASRCEKYVETKYPHEAA
YDAFLCGSVLLKVAHLLVWRVHGALPIPEPSFPLYLDVLAPYVNQVNLIRARVPKINFSG
PDCPSIRPPILIVTVRRWPGVSEQQVYREFQNLCKFDVRRLVGSRFLLLTNKFKDTRRIL
KEYRCHPSLQVSLYRYWRHSPNVSCLLQVCGVVTTWAFIAFLLGRARP
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgatccacggttggctgaatccacagaagcaaaccgcggatacagagggcaaactggtc
cccattgccctctccttgctcacgaccgtgcccctgggtgaccgaatccacccaccccca
gcctcggcgaccaccccggctgtgccgccgcggctgcagactcctcgcgtcctgaccgtc
ttctggttgttcctgcaccacgtggccgcaggcaccttctgcctggccctcctctctgtc
catcaaacccgctcccgtgtctggagcggcttctgtcacgtcctgacggcgccaggcgct
gtgccgacggctcgtgtgcaggtgtgggagaggatcacacttgttttcggtgcacaggct
ctgcatcgagacttgctgggtgtaaatcccagcttcgcctctcgctggctttcgaacgtt
ttttatctatctttcttctctaatagtgacttgaatcccaccaagaattctgggccagtg
atcattcacgcaagcagatgtgaaaaatacgttgagacaaagtatccccatgaagcagcg
tacgatgccttcctgtgcggatcagttcttttgaaagtggcccacttgctcgtatggaga
gtgcacggggctcttcccatccctgagccctccttcccgctgtacctcgacgtgctggct
ccctatgtgaaccaggtgaatcttatccgagccagggtccccaagatcaatttttcgggt
ccagattgccccagtatccgccctcccatcctcatcgtcaccgtcaggaggtggcccggg
gtcagcgagcagcaggtctaccgcgagtttcagaacctctgcaagtttgacgtcaggaga
ctggtggggagccggttcctgctcctgaccaataagtttaaggacacccggaggatcctg
aaggagtacaggtgccaccccagcctgcaggtctccctgtaccgctactggagacactcc
ccgaacgtcagctgcctgttacaggtctgtggcgtagtcaccacctgggcctttatcgcg
tttctcctgggaagagctcgcccctga
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