Pituophis catenifer annectens (San Diego gophersnake): 139313261
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Entry
139313261 CDS
T11059
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139313261 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139313261 (SKIC3)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
139313261 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_12
TPR_16
TPR_17
TPR_11
TPR_8
TPR_CcmH_CycH
ANAPC3
TPR_9
TPR_7
TPR_15
ARM_TT21_C
Fis1_TPR_C
BTAD
TPR_10
TPR_30
TPR_5
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
139313261
NCBI-ProteinID:
XP_070794880
LinkDB
All DBs
Position
Unknown
AA seq
1561 aa
AA seq
DB search
MSSKEVKAALKSARDAIRNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPEQAQ
GAYKKAAELDPGQLLAWQGLANLYEKRNHTDVKEDWIKVYEKLLELYENTDQQKWCEVCK
KLVELYHKDKQYLQVVRSWHKLIKIRKEGGAENVELHQLWKKLVQLLEEGIQLKDNEIEQ
LFLNAFEEAINSSEPVPGEEHKKLYREFLQTVSKFPHESSRMKKACKEMMVVYPNMSYPL
EVLCLHFIQSGNLTEEALGCCQKLLDIDSRSGPALIILGIQSLQERNYNGAEKKLSEGLQ
QFNQCPVGWCNLGEVQMKMHKYQEAVHSCNQALKSLEQLNDLSFIQQQKNIAQHFRARAF
IKIPGANYADEAISSLNQILDKNNDPKLIALRGQAYLKKDLTDEASKIVKELQLAHPDLA
EAHFLEGLICYRQKEYHQAEMSFQRAIAKEGEIAEFHFWLGLTYWFMNEETRKDKSKALT
QFLKAAKLDNFLGDAFHYLGQYYRDVAGDKNRALGCYKKAFERDKTDGVTGAAVVDLSTE
LGDLETALAILTEVTEQASAGRAKWAWLRRGLYYLKVGQHSQAVADLQAALRGDPKDPNC
WEALGEAYLSRGGYTTALKSFRKARELNPKSIYSIYKAAAIEQILGKYKEAIAEYQHILE
KSKDYVPALKGLGECYLMMAKSALANYLDGKALDYIEQSLEFLARAAKYRPEVSCLWKLL
GDACNCVCVISPSKVNVKVSGFLFGQNIEKCVLQKSDLLSLGGRCYGRGLKLMSSPNTWC
DLGINYYNQVQHLTATDSNQNEISELLEKSIQCLKKAVRLDSKNHLYWNALGVVASCKGV
GNYALAQHAFIKSIQADQINVVAWTNLGVLYLTSGKIEQAHEAFKIAQSLEPSHLICWIG
QAFVAETVGSYETMDLFRHTTELSMHTEGAKGYAYWVCSTLQDKTNRNTELYKYNILQMN
AIPTAQVALTKYTERIQNDACAFTMLGYLNEYLQLKKQAADTYQRSVLLLTNSEDRERYN
IVMRNYGRSLCALGQCDDAIKAYLATHLTEFDDIVGIALSYFKKGNFQESQKAYEKALAI
AESEQDKAYILTALAIIEYKQNRVDAAKTVLFKCSILQEPNMESLQALCSLGLIKQDATL
ATAALKELLKHTGKKDDVYKRCLLATAVYALQGRHLAVQRQVSKAVHSHPDNPALWSLLS
RLVPRYVPQNAKGGAVAGNIACILDLNHGKKALLNTAVNQLATGCHKAENKKNILKAVHL
SPDDPTAWAVLLAACHAENTVVHLHNKQSKQTHLEKMIVTAISAKTKAKELPASRAQEIE
EWSLFQAITGLNEAGRTSEAEALCEKGLKNFPEQPMWYLLLRQVQCKPLLQSHKELPDAI
LEELRKAVLSNSTLITAWHWLAQVYQSQGMMVGAEMCYRKSLKLASQQGNLSGKLCSLLR
LAKLALEICMANVSNDHWPSLVQEATTEAMKISFCPLGILFQALMQYNRKMGSRETRRML
ERVVYQSGFPETVVSVARWYLLRHLYAKDDYELIDALTANAKANGDIRVLELDKKLSAAA
S
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaggaagtgaaagcagcattgaaaagtgccagagatgcaataagaaataag
gagtataaagaagcactgaaacattgcaaggcagtattgaaacaagaaaaaaataattac
aatgcttgggtattcattggcttggcggctgctgaattagaacaacccgaacaagctcaa
ggtgcatataagaaggctgctgaacttgatccggggcagttgctggcatggcagggctta
gcaaatttgtatgaaaaaagaaatcatacagatgtcaaagaagactggattaaggtgtac
gaaaaactactagaactctatgaaaacactgatcaacagaaatggtgtgaagtatgtaaa
aagcttgtggagctgtatcataaagataaacaatatcttcaggtggtacgaagctggcac
aaactaataaaaataagaaaagaaggaggtgcagagaatgttgaacttcatcagctttgg
aagaaattggttcagttgctagaagagggcatacaacttaaagataatgaaatagagcaa
ttgttccttaatgcatttgaagaggcaatcaattcttcagaaccagttccaggtgaagag
cacaaaaagctttacagagaattccttcagactgtatcaaaatttcctcatgagtcttct
agaatgaagaaggcctgtaaagaaatgatggttgtctatcctaacatgagttatcccctg
gaagttctttgcttacacttcattcagtcaggtaacttgactgaggaggccctcggttgt
tgtcagaaacttttggatattgattcaagaagtggtccagctctgatcattttagggatt
cagtctctccaagaaagaaattacaatggggctgaaaaaaagctttcagaaggtttgcag
caattcaaccagtgtccagtaggatggtgtaacttaggagaggtgcaaatgaaaatgcat
aaataccaagaagctgttcattcttgtaatcaagctttaaagagcctggaacaacttaat
gacctaagtttcattcagcaacaaaaaaatattgcccaacatttcagagcaagagccttc
attaaaattccaggtgctaactatgctgatgaagccatatcttccctcaatcagatctta
gataaaaataatgatccaaagcttatagctcttagaggacaggcctacctaaagaaagac
cttactgatgaagcttcaaagatcgtgaaagagcttcagttggcacatccagatctggca
gaagcccatttccttgaaggattgatatgttataggcaaaaggagtatcatcaggcagaa
atgagctttcagagagctatagcaaaagaaggtgaaatagctgagttccatttttggctg
ggcctcacttattggtttatgaatgaggagacaagaaaagataaatcaaaagccctcact
cagtttctgaaggcagcaaaactggacaatttcctgggagatgctttccattatttaggt
caatattacagagatgtagctggagataaaaatagagctcttggctgctataaaaaggct
tttgaaagagataaaacagatggtgttactggagcagcagtagtggacttgagcactgag
cttggagacttggaaactgccctcgccatcttgacagaggtaacagaacaagcaagtgct
gggagagcaaaatgggcctggcttcgccgaggactttattatctaaaagtgggacaacat
tcacaagcagtggcagatttgcaagcagctctgcgaggagatccaaaggaccccaattgt
tgggaagctctaggagaggcctatctgagtcgaggaggctacacaacagccctgaagtca
ttccgaaaggcaagagaactcaaccccaagtctatatatagtatttataaggctgctgca
attgaacaaattcttggaaaatataaagaggccattgcagaatatcaacatattttggag
aaatcaaaagattatgtccctgcgctgaaaggtttgggagagtgttatctcatgatggca
aagtctgctcttgctaactatctggatgggaaagctttggactatatagaacaatcactt
gaatttttggcacgggcagcaaaatatcgtccagaagtatcctgcctttggaagttgctt
ggagatgcctgtaattgtgtatgtgttatttcaccatccaaagtgaatgtgaaagtttca
ggtttcctttttggccagaacatagaaaaatgtgtgctccaaaaaagtgatctgctcagt
cttggtggaagatgttatggtcgaggactgaaactgatgtcttcaccaaatacatggtgt
gatcttggaataaattattataaccaagtgcagcatcttacagccacagacagtaaccaa
aatgaaatcagtgaactgttagagaaatccatacagtgcctgaaaaaagcagtgcgatta
gacagtaaaaaccatctctactggaatgctcttggtgtggtagcctcttgcaaaggtgtt
ggaaactatgctcttgcacaacatgcattcattaaatctattcaagctgatcaaattaac
gttgttgcctggaccaatctgggagttttgtatttaacaagtggaaaaatagagcaagca
catgaagctttcaaaatagcccagtctctggaaccctcccatctaatctgttggattgga
caggcctttgttgcagaaactgttggcagctatgaaacaatggatctcttcagacacacc
actgaactcagcatgcatacagaaggtgcaaaaggctatgcctactgggtgtgctcaacc
ttgcaagataaaaccaacagaaatactgaactatataagtacaacatccttcagatgaat
gctattccaacagcacaagttgctttaactaaatatacagaaagaatccagaatgatgca
tgtgctttcacaatgcttggttatttgaatgaatatcttcagctgaaaaaacaggcagcg
gatacatatcaaaggtcagttctattgctgacaaattctgaagacagagaaagatataat
atagtgatgagaaattatggaagatcactctgtgctcttggccagtgtgatgatgccatc
aaggcttatttggcaactcatctaacagaatttgatgatattgtaggaattgctctgtct
tacttcaagaaaggaaatttccaagaaagtcagaaagcttatgaaaaagcacttgccatt
gcagagtctgagcaagataaagcatatatattaacagccctcgcaataatagaatacaaa
caaaatcgagtggatgctgcaaagaccgtcttatttaaatgttctatattacaggagcct
aatatggaaagcctgcaggccttgtgcagtttagggctgatcaagcaggatgcaacactt
gcaaccgcagcacttaaagaactgttaaagcacacagggaaaaaagacgatgtttataag
aggtgccttcttgcaactgctgtctatgcattacaaggcagacatctggctgttcaaaga
caagtttctaaagctgtccacagccacccagataatcctgccctgtggtccctgctgtca
agactggtccctcggtatgtgccacaaaatgccaagggtggagctgtggcaggaaatatt
gcttgtattcttgatctaaatcatgggaagaaagccttgctgaatactgctgttaatcaa
ctggccacaggatgtcacaaagctgaaaacaaaaagaatattctaaaagcagttcatctt
tccccagacgatcctacagcttgggctgtactcttggctgcttgccatgctgaaaacaca
gttgttcatctgcataataagcaatccaagcagacacatctggaaaaaatgattgtcact
gcaatctcagctaagactaaagccaaagaacttccagcttccagagctcaggaaatcgaa
gaatggtctcttttccaagctattactggcttaaatgaggcaggtagaacttcagaagct
gaggctctctgtgaaaagggattaaaaaattttcctgagcagccgatgtggtacctgctg
ttaagacaagttcaatgcaaaccacttttgcagtctcacaaagagcttcctgatgccatt
ttggaagagctccgaaaggcagttctctccaactccacattgattacagcttggcattgg
ttggcacaagtctatcagtcacaaggaatgatggttggtgcagaaatgtgttaccgaaaa
agtctaaaattggcatcacagcaagggaacttgagcggaaaactctgtagtcttctaaga
cttgctaaacttgccttagaaatctgcatggctaatgtttcaaatgatcactggccatct
ctagttcaagaagccaccacagaagctatgaaaatttccttctgtcctctgggtattcta
tttcaagcacttatgcagtataatcgcaaaatgggttctcgagaaacacgtcgtatgtta
gagagagtggtatatcaatctggatttccagaaactgtagtatcagttgcacgatggtat
ctcttaagacatttatatgccaaagatgattatgaattaattgatgctcttacagcaaat
gccaaagctaatggagatattcgagttttggaattagacaagaaactctcagcagcagcc
tcctag
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integrated database retrieval system
