Pituophis catenifer annectens (San Diego gophersnake): 139318383
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Entry
139318383 CDS
T11059
Name
(RefSeq) 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03008
Ribosome biogenesis in eukaryotes
pcae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139318383
09123 Folding, sorting and degradation
03018 RNA degradation
139318383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139318383
03009 Ribosome biogenesis [BR:
pcae03009
]
139318383
03016 Transfer RNA biogenesis [BR:
pcae03016
]
139318383
03036 Chromosome and associated proteins [BR:
pcae03036
]
139318383
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139318383
mRNA degradation factors
5'-3' decay
5' exonucleases
139318383
Ribosome biogenesis [BR:
pcae03009
]
Eukaryotic type
Pre-60S particles
RNases
139318383
Transfer RNA biogenesis [BR:
pcae03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
139318383
Chromosome and associated proteins [BR:
pcae03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139318383
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
139318383
NCBI-ProteinID:
XP_070801910
LinkDB
All DBs
Position
Unknown
AA seq
1320 aa
AA seq
DB search
MGFNHGADICNIGELKIHLDLGKPFMPFEQLLAVLPAASKDLLPKCYQHLMTSEESPIIE
YYPTEFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMAPGNKLLKAEEKQRNRHSECLMCLY
DRDKEFRYLSPWPEKFLSIEKCHTRCEAVSMDAWHVDIADNKITQLDTEKLYFCGFPTLK
HINHKFGLKKSGVQVFQQSSHGENMLLEIIAAEDSEELDIEKVASLILGKSIFVNWPHLE
EARAVAVSDGDTKFYLEERPGPQKVYRGNAVPPTKVTFVGEKENNVWIKEIQGISEHYQR
RKGVIINETSIIVYAQLLTGSRYQLNQNGEVYFEKQWSKQNLPFAYQTIVKDIKTFDCHF
SKLKTLDDLFPLGCTVFMLGTPYYGCTGEVQDSSDVISDGRIRVVFNIPIEPQLDILIQN
QHKYSVKYNPAYVLASRLGVSSYLVSRFTGSIFIGRGARRNPRGDHKANVGLNLKFNKRN
EEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFTYLAKNSPEDIFYEDDIWPGEEENG
AEKVQEIMSWLKGHPVSTLSRSSCDLQILDAAIIEKIEEEIDKCKQRKSNKKVRVTVKSH
LLYRPLEQQHGILPDQDAEYRLFDRVVNVRENFSVPLGLRGTIIGIKGASRESDVLYEVL
FDEEFHGGLTIRSSPSRGYRMPACALINISHGYRTETGNQKLTAIVKPQPAVSSYNSYSS
ESFSVSSQKAHLGGLNHSPRSLFVPTQQAHNKKDDEFCNIWQSLQNPGKSQPSLQNKDEM
VEDFLPQYLNFGASNKSCKPGFNENSFKSQQKAQDSFRKSKEDSKEPRNEGQTQKISNKL
VEDFLPQYVNFGASNRSCKPGFNENSFESQHKAQDSFRKSKEDSKEPRNEGQTQKISNKL
NFAGVSKSNVKLLKRNEGSSTQIEQKSVIHDSSITAKNGSELGDILASLKIFKEREKSPD
SKEPTNEDHLSPQSFAMKGTQMLKEILKIDASATPEGKINEISPSTCKQDSFEPASQCRH
PQKIVDFMNKSNIGGSQNIQAMGKGSHPPLGTPNTVSTAVSELSRICSLVGMLQPDFSFL
RTPQTMTVCQVKLSNGLLVHGPQCHSQNEAKEKAAFFALQQLSSIGMNFPLPPQQPLPPP
PIFPNYQPLGNLMAPRTIPPVFSQQQTANIFPSSFPAFGSVQWGAPMPVPSKSYYTGSYP
GTAYPATIPVGTHNQFIPLQVTKKTAANKINFESKEFQASLQDAQLKNNQSISDTTKLNS
PDTSLDPLRPSHTVQSAASFQEKMASPNSRVPRKKSTPNVSTKRKSRKLAVNFGASKSSE
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggggttcaatcatggagctgatatttgcaatatcggtgaactgaagattcatttagat
ttaggaaaaccatttatgccatttgaacaacttcttgcagtacttcctgcagctagcaag
gatttattaccgaaatgttaccagcatttaatgactagtgaagagtctcccattattgaa
tattatccaacagaatttaaaactgatttaaatggaaagcaacaagagtgggaagctgta
gttttaatcccatttattgatgagaaacgattattagaagccatggcaccaggcaacaaa
ttattgaaagcagaagaaaagcaaagaaatagacacagtgaatgcctaatgtgcttatat
gatagagataaagaattccgatatttatcaccatggccagaaaagttcctttccatagaa
aagtgtcatacgaggtgtgaagctgtgtctatggatgcttggcatgtggatatagctgat
aataaaataactcaattagatactgagaagttatatttttgtggctttcctactctaaaa
cacattaatcacaagtttggtctgaaaaaaagtggagtgcaagtatttcagcaaagcagt
catggagaaaatatgttgctggaaattatagctgcagaagactcagaggagttggatata
gaaaaagtagccagtttgatacttgggaaatcaatctttgttaactggccacatcttgag
gaagccagagctgttgctgtatctgatggtgacactaagttttacttggaggagcgtcct
ggaccccaaaaagtttataggggaaatgctgtgccaccaactaaagtaacatttgttgga
gaaaaggaaaataatgtatggataaaagaaatccagggaatttcagaacactaccaaaga
agaaaaggagtaattataaacgaaacatctataattgtctatgcacaattactaactggg
agtagatatcagttaaatcaaaatggtgaagtgtattttgaaaagcagtggtccaagcaa
aatctaccttttgcataccagacaattgtcaaggatataaaaacttttgattgccacttc
tccaaattaaaaactttggatgacctattccctcttggatgcacagttttcatgctagga
acaccttactatggctgcacaggagaagttcaggattcctctgatgtaatttcagatggc
agaatccgtgttgttttcaacattccaattgaacctcagctggatatcttaatacagaat
cagcataaatattctgtgaaatataatcctgcatatgtattggccagtcgccttggagtg
agcagctatcttgtatcaagatttacaggaagcatttttattggaagaggagccaggaga
aatccacgtggagaccataaagcaaatgtaggtttaaatctgaaattcaataagaggaat
gaagaagtccctggctacactaaaaaggttggaaatgaatggatgtactcttctgcagta
gaacagcttctagctgaatatttagaaagggtaccagaactttttacttacttagccaaa
aatagtccagaagatatattttatgaagatgacatttggcctggtgaagaggagaatggt
gctgagaaagttcaagaaatcatgtcatggctaaagggtcatcctgtcagtacactttca
cgttcatcttgtgatttgcaaattctggatgcagctatcattgaaaagattgaagaagaa
atagacaaatgcaagcaaagaaaaagtaataagaaagtgcgcgtgacagtgaaatctcac
ttattatacagacctttagaacagcaacatggaattttaccagatcaagatgcagaatat
cgattgtttgaccgtgttgtgaatgtgagagagaacttttctgttccccttggacttcgt
ggtactataataggaattaaaggagccagcagagaatctgatgtgctgtatgaagtactg
tttgatgaagaatttcatggaggtttaacaataaggagttcaccttccagaggataccgc
atgccagcttgtgccttaattaacatatctcatggctatcgaactgaaacaggaaatcag
aagttaacagccatagttaagccacagccagctgtgagttcctacaactcatattcatcg
gaatccttttctgtatcttcccaaaaagcacatctaggaggcctcaatcattctcctcgt
tcactctttgttccaactcaacaagctcacaataaaaaagatgatgaattttgcaacatt
tggcaatcattgcagaaccctggaaagtctcagccttccctacaaaataaggatgaaatg
gttgaagattttttacctcaatatttaaacttcggtgccagtaataagtcctgcaaacca
ggtttcaatgagaatagctttaaaagtcagcaaaaagcccaggactcatttaggaaatcc
aaagaagattctaaagagccaagaaatgaaggtcaaacacaaaaaatatcaaacaaactg
gttgaagattttttacctcaatatgtaaacttcggtgccagtaataggtcctgcaaacca
ggcttcaatgaaaatagctttgaaagccagcataaagcccaggactcatttaggaaatcc
aaagaagattctaaagagccaagaaatgaaggtcaaacacaaaaaatatcaaacaaactg
aattttgcaggtgtaagtaagagtaatgtaaagcttctgaagagaaatgaaggctcaagt
acacaaatagaacaaaaatctgtaattcatgattccagtataactgcaaagaatgggtct
gaacttggagatattttggcatctttaaaaattttcaaggaaagggaaaaatcacctgat
tccaaggagccaacaaatgaagatcatttatctccccagtcgtttgccatgaaaggaaca
cagatgctcaaagaaattttgaagatagatgcttctgccactccagaaggaaagattaat
gaaatttcaccttccacttgtaaacaggactcttttgaacctgcatcacaatgtagacac
ccccaaaagatagtggacttcatgaataaatctaatattggagggtcacagaacattcaa
gccatgggaaaaggaagccatcctccccttggaacaccaaatacagtatctactgctgtg
tctgaactttctcgtatctgttcccttgttggaatgttgcaaccagatttctcattcctt
agaaccccacagacaatgacagtttgtcaagtgaagttatccaatggcttattagtgcat
ggacctcagtgccattctcaaaatgaggccaaggagaaagcagcattttttgctttacaa
cagttgagctctattgggatgaattttcccttgccaccgcagcaaccattgccaccccca
ccaatatttccaaattatcagccactgggaaatcttatggcacctagaactatccctccg
gttttcagtcaacagcagactgctaatatatttccttcatcatttcctgcctttggttca
gtgcaatggggagcaccaatgccagttcccagcaaatcttattatacaggttcatatcct
ggaactgcatatcctgcaactataccagttggcacacataaccaatttatacctttgcag
gtaactaaaaaaacagctgcaaacaaaataaattttgagtctaaggagttccaagcttct
cttcaggatgcacagttaaagaacaatcaatcaatatctgacaccacaaaactgaattca
ccagatacttccttagatcctttaagaccttctcacactgttcaatctgcagcatctttt
caagaaaaaatggcatctccaaattcaagggtacctcgtaaaaagtcaacaccaaatgtt
tctaccaaacgaaaatccagaaaattggctgttaattttggtgcatcaaaatcttcagaa
taa
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