Porphyromonas cangingivalis: NCTC12856_01823
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Entry
NCTC12856_01823 CDS
T06514
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pcag
Porphyromonas cangingivalis
Pathway
pcag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC12856_01823 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcag03021
]
NCTC12856_01823 (rpoB)
03400 DNA repair and recombination proteins [BR:
pcag03400
]
NCTC12856_01823 (rpoB)
Enzymes [BR:
pcag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC12856_01823 (rpoB)
Transcription machinery [BR:
pcag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC12856_01823 (rpoB)
DNA repair and recombination proteins [BR:
pcag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC12856_01823 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
HisKA_3
Glyco_hydro_80
DUF4535
Motif
Other DBs
NCBI-ProteinID:
VEJ04534
LinkDB
All DBs
Position
1:2065030..2068845
Genome browser
AA seq
1271 aa
AA seq
DB search
MSSHNPTQRVNFASIKNPMEYPDFLDVQLKSFKDFLQLDTPPEKRKKEGLYKVFAENFPI
HDTRNNFVLEFLDYYIDPPRYTLDECISRGLTYNVPLKAKMKLYCTDPEHEDFETVIQDV
YLGPIPYMTESGTFIINGAERVVVSQMHRSPGVFFSESVHPNGTKLFSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFETDKDILNLFGIAEEVKVSKSNLKKYYGRK
IAARVLNSWIEDLVDEETGEVVSMERYDVIVDRDELLTEDNVDQIIESGAKNILITKDDS
ELGLDYSVITNTLQKDPSNSEKEAVYHIYKQLRNQDPVDDASAREVINSLFFSEKRYDLG
DVGRYRINKKLGINIDEETKVLTTEDITAIIAHLVELKNSKQVVDDIDHLSNRRVRTVGE
QLYNQFGIGLARMARTVRERMNVRDNEVFTPIDLINAKTISSVVNSFFGTNALSQFMDQT
NPLAEITHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVY
AKINDLGFISTPYRKVVDGKVDFSENGVEYYTAEAEEDKTVAQGNAPLDENGKFIKDAVK
ARYGSDFPVVSPSEIDLMDVSPIQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLIHS
DAPIVGTGVEQKLVHDSRTQIVAEGAGTVEFVDASVIKIRYDRSEDDTFVSFEDNLKIYN
LPKFRKTNQSTTIDLRPICRKGDRVEKGDILTEGYSTENGELALGRNVQVAYMPWKGYNY
EDAIVLNERMVREDIFTSVHVDEYILEVRETKRGLEELTSDIPNVSEEATKDLDDRGIIR
VGARVHPGDILIGKITPKGESDPTPEEKLLHAIFGDKAGDVKDASLKANPSLSGVVIKTH
LFSKAMHSKKDKGGVREIVKKLDEEMEENLAELRELMLKKLIQLTDNKLSNGIRNFEDTE
IVPKGVKLTPAVCSKIEFGEVAIFNWTGDEHTDELVAKLISNYLRKAKEIESEYRRKKFD
ATIGDELPNGIIQIAKVLIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFMEDGTPMD
LCLNPLGVPSRMNLGQIFEAVLGWAGRRLDVKFATPIFDGASLDDLDQWTDKAGIPRYGK
TYLYDGGTGEQFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQR
FGEMEVWALEAYGAAHVLQEMLTIKSDDVVGRSKAYEAIVKGAPMPTPGIPESLNVLLHE
LKGLGLSFCME
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcacataatcctacacaaagagtaaactttgcatcgattaagaatccaatggag
tatcctgacttcttggatgtgcagctgaagtctttcaaggattttcttcagcttgataca
cctcccgagaagagaaaaaaggagggactctacaaggtctttgcagagaattttccaatc
cacgatacgagaaataactttgttcttgagtttttggactattacatagatcctccaagg
tatactctcgatgagtgtatttcgaggggattgacgtacaatgtccctctcaaggctaag
atgaaactctattgtacggatcctgagcatgaggacttcgaaacggtaatacaggatgtg
tatctcggtcctataccttatatgaccgagtccggtacgttcatcatcaatggtgctgaa
cgtgttgtcgtatctcagatgcaccgttcgcccggtgtgttcttcagtgagagcgtgcat
ccaaacgggacaaagcttttctctgcccgtatcatcccattcaaggggtcttggatcgag
tttgcgacagacatcaataatgtcatgtacgcttacatcgaccgtaagaaaaagttgccg
gtgactacactcctccgtgcaataggttttgaaacagataaggacatactcaacctcttc
ggtatcgctgaagaagtcaaggtgagtaagtctaatctaaagaagtactacgggcgcaaa
attgccgctcgtgtgcttaactcatggatcgaggatcttgtggatgaggagaccggtgaa
gtggtctctatggaacgctatgatgtcatcgtcgatcgtgatgaactccttaccgaagat
aatgtggatcagatcatcgagtccggcgcaaagaatatccttatcaccaaggatgacagt
gagcttggtctggactattcggtaatcacaaatacgctacaaaaggacccttctaactct
gaaaaagaagcggtatatcatatatataagcaacttcgtaatcaggatcctgttgatgat
gcttcggcaagagaagtgatcaacagcttgttcttctctgaaaagagatatgaccttggt
gatgtcggtcgttatcgtatcaacaagaagctcggtatcaacatcgatgaggagaccaaa
gtcttgactacagaggatatcactgcgatcattgctcatctcgtagagttgaagaacagc
aagcaggtcgtcgatgatatcgaccacttgagtaaccgtcgtgtacgtactgtgggcgaa
cagctctacaaccagttcggcatcggtcttgctcgtatggctcgtacagtgagagagcgt
atgaacgtcagagacaacgaagtcttcactccgatcgacttgatcaatgcgaagacaatt
tcttctgttgtcaattcattctttggtacgaatgctctttctcagtttatggatcagact
aacccattggctgagatcacacacaagagacgtctgtcagcccttggtcccggtggtttg
agccgtgaccgtgctggtttcgaggttcgtgacgtacactatacgcactatggtcgtctc
tgtcctatcgagactcctgaaggaccaaacatcggtctgatttcctctctctgtgtctat
gctaagatcaacgaccttggatttatctccaccccttatcgtaaggtggtcgatggtaag
gtcgacttctcggagaatggagtcgaatactatactgcagaagcggaagaggacaagact
gtcgcacagggtaatgctccacttgacgaaaatggtaagttcatcaaggatgctgtcaag
gcaagatatggctcagacttccctgtggtgtctccatcagagatcgacttgatggacgtt
tctcctatacagattgcttctatcgcagcatctcttatcccattccttgagcacgacgat
gctaaccgtgcactcatgggatcgaacatgatgcgtcaagctgtgccacttatccatagt
gatgctcctatcgtaggtacaggtgtcgaacaaaaacttgtacatgactctcgtacacag
atagtcgcagagggtgcaggtacagttgagtttgtggatgcttctgtgatcaagatcaga
tatgatcgttcagaagatgatacatttgtcagcttcgaggacaatctcaaaatatacaac
cttccgaagttccgcaaaaccaatcaaagcaccaccattgacttgagacctatttgtcgt
aagggcgacagagtggagaagggggatatccttaccgaaggatattcgaccgaaaatgga
gagttggctcttggacgtaatgtgcaggtggcttatatgccttggaaggggtataactat
gaggatgctatcgtgctcaacgaacgcatggtacgtgaagatatctttacttcggtacac
gtggacgagtacatcttggaggtgcgtgagacaaaacgtgggctcgaagaactcacttcg
gatatccctaatgtcagcgaggaggctacaaaagacctcgatgacagaggtatcatccgt
gtcggtgctcgtgtacatcccggagacatccttatcggtaagatcactcctaagggagag
tccgatcctactccggaggaaaagcttctgcatgcgatcttcggcgataaggccggtgat
gttaaggacgcttctctcaaggcgaacccttctctaagtggtgttgtcatcaagacccac
ctcttctcaaaggctatgcacagtaagaaggataagggtggcgtccgtgaaatcgtcaag
aagcttgacgaggagatggaggaaaatcttgctgaattgagagagctcatgctcaagaaa
ctcattcagcttacagataataagttgtccaacggtattcgtaacttcgaagacaccgag
attgttccaaagggtgtaaagttgacccctgctgtgtgctcaaagattgagtttggcgaa
gtggcaatcttcaactggaccggtgatgagcataccgatgaactcgtggcgaaacttatc
tccaattacttgcgtaaggctaaggagatagagtctgagtacagacgtaagaagtttgat
gcaaccatcggtgacgaactccccaatggtatcatccagatcgctaaggtgcttatagct
aagaagcgtaagatccaggtcggtgacaagatggcgggacgtcacggtaacaagggtatt
gtatccaaaatcgtccgtcaggaggatatgccatttatggaagatggtactcctatggac
ttgtgtctcaatccacttggtgtgccttcgcgtatgaacctcggacagatttttgaggct
gtcctcggatgggcaggccgccgtcttgatgtgaagtttgctactccgatctttgatggg
gcttcgctcgatgatttggatcagtggacagacaaggccggcatcccacgttatggtaag
acctatctgtacgatggaggtacaggcgaacagtttgaccagcctgcgactgtcggtgtg
acatacttcttgaagcttgggcacatggtcgacgacaagatgcacgcgagatctatcggt
ccttactctctcatcactcagcagcctctcggtggtaaagcacagttcgggggccagcgt
ttcggagagatggaggtttgggcccttgaagcttacggagctgcacacgtccttcaggag
atgttgaccatcaagagtgacgatgtcgtagggcgttcgaaagcttacgaggctatcgtc
aagggtgctcccatgcctacaccgggcattcctgagtctctcaatgtcctcctacacgag
ctcaaaggtcttggtctaagcttctgtatggagtaa
DBGET
integrated database retrieval system
