Pasteurella canis: K7G93_001949
Help
Entry
K7G93_001949 CDS
T07908
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pcai
Pasteurella canis
Pathway
pcai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K7G93_001949 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcai03021
]
K7G93_001949 (rpoB)
03400 DNA repair and recombination proteins [BR:
pcai03400
]
K7G93_001949 (rpoB)
Enzymes [BR:
pcai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K7G93_001949 (rpoB)
Transcription machinery [BR:
pcai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K7G93_001949 (rpoB)
DNA repair and recombination proteins [BR:
pcai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K7G93_001949 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
UEC23174
LinkDB
All DBs
Position
2069352..2073380
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQRDPEGLQGLEAAFRSVFPIV
SNNGNTELQYVSYQLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPGTIKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALNYTTEQILDLFFDKVVFEIKDNKLLMT
LVPERLRGETATFDIEANGKVYIERGRRITARHIRALEKDNVTQVEVPTEYIVGKIAAKD
YVDLETGEVICPANMEVSLEMLAKLSQAGYKTIETLFTNDLDHGPYISETLRVDPSSDRL
SALVEIYRMMRPGEPPTKEAAESLFDNLFFSSDRYDLSAVGRMKFNRSLGIDEEIGSGIL
SNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRKVVNGQVT
EEIEYLSAIEEGKYVIAQANSNLDEDLRFTDAFVTCRGEHGESGLYRPDEIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEKAVAVDSGVTVIAK
RGGTIQYVDASRIVVKVNEDETIPGEAGIDIYNLVKYTRSNQNTCINQVPCVSLGEPIGR
GEVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD
LVEELEILEAGLFTRVRSLLIAGGFDAKNLDKLDRTKWLEQSLNDESQQNQLEQLAEQYE
ELRKEFERKLEIQRGKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHLGLAAKGIGEKINAMIKQQQEVA
KLREYMQKAYDLGHGSQKVDLSTFTDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLE
LGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVGGTHQMDPGTP
ESFNVIMKEIRSLGINIDLDED
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcatataccgagaaaaaacgtattcgtaaagactttggcaaacgcccacaa
gttttaaatgtaccttatttattaacaattcaactagactcttttgataaatttattcaa
agagacccagaaggtttgcaaggcttagaagctgcattccgttctgtcttcccaatcgtc
agcaataatggcaatactgaactacaatatgtgagctatcaattgggggagccagtattt
gatgtaagagaatgtcaaattcgtggcaccacttatgctgcaccattgcgtgttaaatta
cgtttagtcagctatgacaaagatgctgcgccaggcacaatcaaagatattaaagaacaa
gaagtctatatgggtgaaattccattaatgactgataacggtacttttgttattaatggt
actgaacgtgttattgtgtcgcaattgcatcgtagccctggtgtattctttgattctgac
aaaggtaaaacacattcttcaggtaaagttttatataatgcacgtattattccttatcgt
ggttcttggttagattttgaatttgatccaaaagataacttatatgcacgtattgaccgc
cgtcgtaaattacccgcaacgattattttacgcgcattaaactacactacagaacaaatc
ctcgatcttttctttgataaagttgtatttgaaattaaagacaacaagttgcttatgaca
ttagtgccagaaagattacgtggtgaaacagcaacatttgatattgaagcaaatggcaag
gtttatattgagcgaggtcgtcgcattacagcacgtcatattcgtgcattagaaaaagat
aatgtcactcaagttgaagttccaacagaatatattgttggtaaaatcgccgctaaagat
tatgttgatttagaaactggtgaagtaatttgccctgctaatatggaagtttcgttagaa
atgttagcgaaattatctcaagcaggctataaaacaattgaaaccttatttaccaatgat
ttagatcatggaccttatatttctgaaacattgcgtgttgatccttctagcgaccgttta
agtgcattggttgaaatttatcgcatgatgcgcccaggtgagccaccaacaaaagaagcc
gcagaaagtttatttgataatctattcttctcttcagatcgttatgatttatctgcagta
ggacgtatgaaatttaaccgttctttaggtattgatgaagagattggcagtggtatttta
agcaatgatgatatcatcggtgtaatgaagaaactaattgagattcgtaatggtcgtggt
gaagttgatgatatcgatcatttaggtaatcgtcgtattcgctcagttggtgaaatggca
gagaatcaattccgtatcggtttagtaagagtggaaagagcggtaaaagaacgcttatct
ctgggagatttagatgcggttacgccacaagatttgatcaatgcaaaacccatttctgct
gcagtgaaagagttttttggctcttcacaactttcacagttcatggatcaaaacaacccg
ttgtcagaagtcacgcacaaacgtcgtatttctgcattaggtccaggtggtttaacacgt
gagcgtgcaggcttcgaagttcgagatgttcacgcaactcactatggtcgtgtgtgtcca
attgaaacgcctgaaggtccaaacattggtttgatcaactcactttcagtttacgcccgt
actaacgattatggtttcttagaaacaccataccgtaaagtagtaaatggtcaagtgaca
gaagaaattgaatatttatctgcgattgaagaaggtaaatatgtgattgcacaggcgaac
tctaatttagatgaagatttacgttttactgatgcatttgttacatgccgtggagaacat
ggtgaatctggcttatatcgtccagatgaaatccattatatggacgtttcaactcaacaa
gtggtttctgttgcagcagcattaattccattcttggagcatgatgatgcaaaccgtgcc
ttgatgggggcaaacatgcaacgtcaggcagttccaacattacgtgcggataaaccatta
gtcggcacaggtattgagaaagctgttgcagtggactctggtgtaacagtaattgcaaaa
cgtggcggtacaattcaatatgttgatgcttctcgtatcgtagtaaaagtcaatgaagat
gaaacgatcccaggtgaggcaggtattgatatttataaccttgtaaaatatacccgttca
aaccaaaatacttgtatcaaccaagtaccttgtgtgtcattaggtgaacctattgggcgt
ggtgaagtgttagctgatggtccttcaacagatttaggtgagttagctcttggtcaaaat
atgcgtgttgcgttcatgccttggaatggttataactttgaagactcaatgttagtttct
gaacgcgttgtacaagaagatcgtttcactacaattcatatccaagaactttcttgtgtg
gcacgtgatactaaattaggctcagaagaaataacagcggatattccaaacgtaggtgaa
gcagcattaagtaaacttgatgaatctggtattgtttacattggtgcggaagtaaaaggt
ggcgatattcttgtaggtaaagtgactccaaaaggcgagacacaattaactcctgaagaa
aaattactacgtgcaatctttggtgaaaaggcatctgatgtaaaagattcttcattacgt
gtaccaaatagcgtatcgggtaccgttattgacgttcaagtcttcactcgcgatggcgta
gaaaaagacaaacgtgcgcttgaaattgaagaaatgcaattaaaacaagcgaaaaaagac
cttgtggaagaattagaaatccttgaagcaggtttgtttacacgtgttcgtagccttctc
attgcgggtggtttcgatgctaaaaacttagataaattagaccgcactaaatggttagag
cagtcattaaatgatgagtcgcaacaaaatcagttagaacagcttgctgaacaatatgaa
gaattacgcaaagagtttgagcgtaagttagaaatccagcgtggtaaaatcattcaaggt
gatgatttagcacctggcgtattgaaagtagtgaaagtgtatcttgcggtgaaacgtcag
attcaaccaggcgataaaatggcagggcgtcatggtaacaaaggggttatctcaaaaatt
aaccctgtagaagacatgccgtatgatgaaaacggccagcctgttgatattgtgttgaat
ccactgggtgttccatcacgtatgaacatcggccagatcttagaaactcacttaggttta
gcggcgaaaggtattggtgagaagatcaatgcaatgatcaaacaacaacaagaagtggca
aaattgcgtgaatatatgcaaaaagcatacgacttgggtcacggctctcaaaaagtcgat
ttaagtacttttactgatgaagaggtgatgcgtttagcacaaaacttacgtaaaggttta
ccgcttgctaccccagtatttgatggtgcacatgaaagcgaaatcaaaggcttattagag
ttaggtggtttaccaacctcaggtcaaattactttatttgatggccgtactggtgagaaa
tttgagcgtccagtaacagtaggttacatgtatatgctcaagttgaaccacttagttgac
gacaaaatgcatgctcgttcaacaggttcttatagcttggtaacacaacaaccattgggt
ggtaaagcacaattcggtggtcagcgtttcggtgaaatggaggtgtgggcacttgaagca
tatggtgcagcttataccttacaagagatgttgacagtgaaatccgatgatgtgaatggt
cgtacgaagatgtacaaaaacatcgtgggtggcacgcatcaaatggatccaggcacacca
gaatctttcaacgtcattatgaaagaaattcgctcgcttggtatcaacattgatttagat
gaagattaa
DBGET
integrated database retrieval system
