Saccharococcus caldoxylosilyticus: BV455_01660
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Entry
BV455_01660 CDS
T07489
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pcal
Saccharococcus caldoxylosilyticus
Pathway
pcal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BV455_01660 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcal03021
]
BV455_01660 (rpoB)
03400 DNA repair and recombination proteins [BR:
pcal03400
]
BV455_01660 (rpoB)
Enzymes [BR:
pcal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BV455_01660 (rpoB)
Transcription machinery [BR:
pcal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BV455_01660 (rpoB)
DNA repair and recombination proteins [BR:
pcal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BV455_01660 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QXJ38341
LinkDB
All DBs
Position
complement(1598111..1601680)
Genome browser
AA seq
1189 aa
AA seq
DB search
MTGRLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYKWFLDEGLREMFREISPIEDFSG
NLSLEFIDYSLGEPKYTVEEAKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYYSDKVDKNGKRGYSATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNEYLRNTLEKDNTDSTEKALIEIYERL
RPGEPPTIENAKNLLISRFFDPKRYDLASVGRYKINKKLHIKNRLFNQRLAETLIDPETG
EIIAEKGAIIDRRMLNRLLPYLEKGIGLQTYKPNGGVVDEPISVQSIKIYSPNDPDNEKV
INVISNGYIAEDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKF
GFIETPYRRVDPETGRVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVVARFRGEN
IVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGT
GMEYVSAKDSGAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQ
GTCYNQRPIVKKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSER
LVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGD
LLVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGDE
LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPL
GVPSRMNIGQVFELHLGMAAKKLGLHIASPVFDGATEEDVWNILEEAGMPRDAKTVLYDG
RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQSLGM
DVTILTSDEQEVNMENFDEDEDHAADAIVSEVKPAEKEKAAEKDAVTKE
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggccgactagttcaatatggacgacaccgccaacggagaagttacgcgcgcatt
agtgaagtgctcgaattgccgaatcttattgagattcaaacttcctcttacaaatggttt
cttgatgaaggattgcgggaaatgttccgcgaaatttccccgatcgaagacttttccggt
aatctttctcttgaatttattgattatagtttaggggagccgaaatatacggtagaagaa
gcgaaagaacgcgatgttacatatgctgcgccgcttcgcgtaaaagtccgtttaattaac
aaagagacaggtgaagtaaaggaacaagatgtgtttatgggtgatttcccgttaatgaca
gaaacagggacgtttatcattaacggggcagagcgggttattgtatcccagcttgtccgc
tctccgagcgtgtactacagcgacaaagtggataaaaacggaaaacgaggctattcagcg
accgtgattccgaatcgcggcgcctggctagaatacgaaactgacgccaaagatgttgta
tatgttcgcattgatcgcacacgtaaactgccagttacggtgcttcttcgtgcgctcggg
tttggttccgatcaagaaattattgatttgatcggcgacaatgagtatttgcgcaacacg
cttgaaaaagataatacggatagcaccgaaaaagcgctcattgaaatttacgagcgcctg
cgcccaggcgaaccgccgacgattgaaaacgcgaaaaacttgttaatctctcgctttttt
gatccgaaacgctatgatttagcaagcgtcggacgttataaaattaataaaaagctccat
attaaaaaccgcctgtttaaccaacgtcttgccgaaacattaatcgatccggaaacaggc
gagattattgccgaaaaaggagcaatcattgaccgcagaatgttaaatcgtttgctgcca
taccttgaaaaaggcattggcttgcaaacttataaacctaacgggggcgtagtagacgag
ccgatttctgtgcagtcgattaaaatttactcgccaaatgacccggacaacgaaaaagtg
atcaacgtcatcagcaacggctatattgctgaagatgtcaaacatattactccagcggat
attatcgcttccatcagctatttctttaacttgctgcatggggttggcgatacggacgat
atcgaccatttaggaaaccgtcgtcttcgttcggtcggtgaattgttgcaaaaccaattc
cgcatcggtttatctcgtatggagcgggttgttcgcgagcgtatgtccattcaagataca
aacacgattacaccgcagcaattgatcaacattcggccggtcatcgctgcgattaaagag
tttttcggaagctcgcagctttcgcaatttatggaccaaacgaacccgcttgccgaatta
acgcataagcgccgtctttcggcgttaggaccaggtgggctgacgcgggagcgcgcaggg
tttgaggtgcgcgacgttcactactcccactatggacggatgtgtccgattgaaacccct
gagggtccaaacattggattaattaactcgttatcgacttatgcgaaagtcaataaattc
ggtttcattgaaacgccgtatcggcgcgtcgacccggaaacaggaagagtaaccgatcaa
attgattacttaacggcagacgaagaggacaactatgttgtggctcaggcgaacgtcccg
cttgcggaagatggaacgttcttagaagaaaatgttgtcgcacgtttccgcggggaaaac
attgtcgtcaaacgcgaccgcgttgactatatggacgtgtcgccaaagcaagttgtatcg
gcagcgacggcgtgcatcccgttcttagaaaacgacgactcgaaccgcgcgcttatgggt
gcgaacatgcagcgtcaagcagttccgctgttagagccggaagcgccaattgtcggtaca
ggaatggaatatgtatcggcgaaagactccggtgccgctgttatttgtaaacatcgcggt
attgtcgaacgggtagaggccaaagaaatttgggttcgccgtctcattgaagtagacgga
aaggaagtaaaaggagaccttgacaaatatcgtctgttgaaatttgtccgctcgaaccaa
ggaacttgctacaatcagcgtccgattgtgaaaaaaggtgacattgttgaaaaaggtgaa
attttagcagacggtccgtcgatggacaaaggtgagcttgcgcttggccgcaacgtgctt
gttgcctttatgacttgggacggctataactacgaagacgcaattattatgagcgaacgc
ctcgtcaaagaggacgtatatacatcgatccatatcgaggagtatgaagcggaatcccgc
gatacgaaacttggtccagaggaaattacgcgcgatattccaaacgtcggggaggatgcg
ctaaagaatttagatgagcgcggaattgtccgcatcggtgcggaagtaaaagacggcgat
ttgctcgttggtaaagtaacaccaaaaggaatgacggagcttacagccgaagaacggttg
ttgcacgccatcttcggggaaaaagcacgcgaggtgcgcgatacatcgctgcgcgttccg
catggcggcggcggtattgtgctcgatgtgaaagtatttaaccgcgaagacggcgatgag
cttccgcctggcgtcaatcagcttgtccgcgtctatattgtgcaaaaacggaaaatttcc
gaaggcgataaaatggcaggccgccacggaaacaaaggggttatttcccgcatcttgccg
gaagaagatatgccgttcttgccggatggcacaccgattgatattatgttaaacccgtta
ggcgttccgtcgcggatgaacatcgggcaagtgtttgagctgcatcttgggatggccgcg
aaaaaactcggtcttcatattgcgtcgccggtatttgacggcgctacagaagaagatgtg
tggaatatactggaagaagcggggatgccgcgtgatgcaaaaacggttctatacgatggc
agaacgggagaaccgtttgacaaccgcgtatcggtcggcattatgtatatgattaagctg
gcgcacatggttgacgataagcttcatgctcgctcaacgggaccgtactcgcttgttacg
cagcaaccgctcggtgggaaagcgcaatttggcggacaacgtttcggcgaaatggaagta
tgggcgctcgaagcttacggtgctgcgtatacattgcaagaaatacttaccgtcaaatcg
gacgatgtggttggtcgcgtgaagacatacgaagcaattgttaaaggggaaaacataccg
gagccaggtgtgccggagtcgtttaaagttttaattaaagagctgcaaagcttaggcatg
gatgtgacgattttaacgagcgatgaacaagaagttaatatggaaaacttcgatgaggac
gaagaccatgctgccgatgcgattgtttcggaagtgaaaccggcagaaaaggaaaaagca
gctgaaaaagacgccgtcacgaaagaataa
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