Pomacea canaliculata (golden apple snail): 112576717
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Entry
112576717 CDS
T05881
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112576717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcan03019
]
112576717
Messenger RNA biogenesis [BR:
pcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112576717
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112576717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
DUF3819
Motif
Other DBs
NCBI-GeneID:
112576717
NCBI-ProteinID:
XP_025115170
LinkDB
All DBs
Position
LG12:12855321..12880773
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AA seq
1444 aa
AA seq
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MDWHGSTLAQGSLGLQGALGGPTGATSAAPAPAPVQVSASQAQPSQPPIAAAAAAAATAS
TGTTAMRAFPKPSIATATTLIALLPDQAGKKENLATEPLQDKVFFIFNNLSLANMSQKGE
ELKEQVADEFIPWVSQYLVMRRASIEPNFHTLYSCFVDVLKIHTLTQMVIKETYRNIKVL
LRSDKGAANFSDRTLLKNLGHWLGMLTLAKNKPILTVDIDLKGLVYEAYQKGSQELLYVV
PFAAKVLESCSKSKVFKVPNPWTMAMMNVLAELHQEQELKLNLKFEIEVLCKTLGLDVNE
LKPTTYLKDPTRMPSIEHQLSAPVPKEVLLPPDDIPPPTQPPPSLSMPFSISQVPVSMPP
PVPMPALPPAVGYPNYDSINTNMATFSQQLIFSDNHPLVQANPILKQVIRPTIERAVTDL
ILPVVERSIKIALTTCEQIVKKDFALDPDENRMRTAAHCMARNITAGLALITCREPVMVQ
IAANLKQAFLTALRSVAQQQKEVIEQTAQVITNEVIEFCSAFIQKTAVERCIPEIDKRLA
TEFDLRKHARNEGRRYCDPIILTYQAERMPEQIRLKVGAVTPQQLTVYEEFARNIPGFMP
ATHDIYPPSVNKTFLPQQQQPPPPPPPPLPQQQQQSMPSLPQQQQQPPPPPSVPPPQFAP
DEVLIYDRIIRELEQHLQIVLMLHNNHIATQLRSLLDTAIQARNTRDSRAAIALLQKAVE
GLLDQYSLSSINDQELLLRFRECNLLVLKGLQDNSAFGSATSKEVTRCLLSCHEDFRYNI
DAVDILIRSGLVSLQQYDAFLSSVIENGLNSVAVSFAMQLLQRLCIEEKHPSNGISESDF
PNTIETLASIASRSRGSPDGLESLVNMLRNPESNGMPIDRTSGGPTSMMQSGISQAREFD
DPPGLHEKTEYLLREWVNMYHSPAAGRDSTKAFTCFVQQFSEVTKHLLSKQMHQQSILKT
DELITRFFRLCTEMCVDLCYRALSEQTHNPTLVRAKCFHTLDAYVRLIALLVKHSGDTAN
TITKINLLNKVLGIVAGVLLQDHEVRYTEFQQLPYHRIFIMLFIELNAPEPILESINYQV
LAAFCQVFHILRPAKAPGFAYAWLELISHRVFIGRLLALTPHQRGWGMYAQLLMDLFKLL
APFLRNADLNKPTQLLYKGTLRVLLVLLHDFPEFLCDYHYTFCDVIPPNCIQMRNLVLSA
FPRQMRLPDPFTPNLKVDNLPDITQAPRILTNYVGIIQPPSFKKDLESYLKTRSPITFLS
DLKSNLQSSESGCHYNIQLINALVLYVGTQAIQHVHSKGQTPSISTIAPSSHMDIFQNLA
VNLDTEGRYLFLTAISNQLRYPNSHTHYFSCTLLYLFAQANTEAIQEQITRVLLERLIVN
RPHPWGLLITFIELIKNPTYKFWNHEFVHCAPEIQKLFESVARSCMQPKQTSNLRDPDNP
AEAH
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggactggcatggttccactctggcacaaggcagcctgggcctccaaggtgcattgggt
ggccccactggggctacctccgcagcaccggctcctgctcctgtccaggtgtctgcatct
caggctcagccttcacagcctccaatagcagcagctgcagcagcagctgcaactgcatcc
actggtacaacagctatgagagcctttccaaagccttctattgccactgcaacaacattg
attgcgctgttgccggaccaggcaggaaagaaggaaaatcttgccacagagcctcttcaa
gacaaggtcttctttatattcaacaatctttctcttgccaacatgtcacagaagggtgag
gaattaaaagagcaagttgctgatgagttcataccctgggtgtctcagtacttggtaatg
agacgtgccagcattgagcccaacttccacaccttgtattcttgttttgttgatgttctt
aaaatccacacacttacgcaaatggtcatcaaggagacttaccgcaacatcaaggtcttg
ctgagaagtgacaaaggtgccgccaacttttcagacagaactcttctgaagaatcttggt
cattggctgggcatgcttacgttggcaaaaaataaaccaatacttacagttgacatagat
ctgaaagggttggtgtatgaggcatatcaaaagggtagtcaagagctgttgtatgttgtt
cctttcgctgctaaagtgctggagtcctgttcaaaaagcaaggtgttcaaagtgcctaat
ccttggaccatggccatgatgaatgtgttggctgagttgcaccaagagcaggaactgaag
ctcaatctcaaatttgagatagaggtgctgtgcaaaaccttgggacttgatgtcaatgag
ctcaaaccaacaacctatctcaaggatcccacacgcatgccttcaattgaacaccagctt
tcagcaccagtaccaaaggaggttcttttgccaccagatgacattcctcctcccacacag
ccacctccaagcctctctatgcctttctctataagccaggtaccggtctctatgccgcct
cctgtccccatgccagctctgcctcccgcagttggctatcctaactacgattccatcaac
acaaatatggctactttctctcagcagcttattttcagtgacaatcaccctcttgtgcag
gctaaccctattctgaaacaagttattcgacccaccattgagcgagctgttactgacctg
atccttcctgttgtggagcgctccatcaaaattgcactaaccacttgtgaacagattgtc
aaaaaagacttcgctcttgatcctgatgagaaccgcatgcgaacagctgcacattgtatg
gcacggaacatcacggctggacttgccctgatcacatgtcgggaacctgtcatggtgcaa
atagcagctaatctcaagcaagctttcttgacagctttgaggagtgtggcacagcagcag
aaggaggtgatagagcagacggcacaggttataactaatgaggtgatagaattttgttcg
gcgttcatccagaaaacagctgttgagagatgtatccctgagatagataaacgcttggca
acggagtttgacttacgtaaacatgcacgcaatgagggccgccgctactgtgatcctatc
atcttgacataccaagcagaaagaatgcctgagcaaataaggcttaaggtgggagcagtc
acacctcagcagctgactgtctatgaagaatttgccaggaacattccaggatttatgcct
gctacacatgacatttaccctcctagtgttaacaagacatttttgccacagcagcagcag
cccccaccaccccctccaccaccattgccacaacagcagcagcagtccatgccatcactc
ccacagcagcagcaacagcccccaccaccaccatcagttccacctccacagtttgcccct
gatgaagtgctgatctatgatcgcataatacgtgaactggagcagcacctgcagattgtg
ttaatgctgcacaacaaccacattgccacccaacttcgcagtctgctggatactgctata
caagctcgaaatacccgtgattcacgtgctgccatagcgcttctgcaaaaggcagtggaa
gggttgctggatcagtactctctctcgagtataaatgaccaggagctgctgctacgtttc
cgtgagtgcaacctcttggtgctcaagggtctacaggacaacagtgcttttgggagtgct
acaagcaaggaagtcacaagatgcctgctttcttgccacgaagacttcaggtataatatt
gatgcagtcgacatcctcatccgcagtggactagtcagccttcagcagtatgatgctttt
ctgtcttcagtcatagagaatggacttaactccgttgctgtcagctttgccatgcagctt
ttgcagcgtttatgcattgaagagaagcatccctcaaatggaatttcagagtctgacttt
cccaacactattgagacacttgcatcaatagcctccagatctcgaggatcacctgacggg
cttgaatctctagtcaacatgctgcgtaacccagaatccaatggcatgccaatagaccgc
acatcaggcgggcccacatccatgatgcagtcaggcatctcacaggcccgtgagtttgat
gatcccccaggattgcatgaaaagacagagtacttgttgagggagtgggtgaacatgtac
cattctccagctgctggtcgcgatagcaccaaggcttttacttgctttgtgcagcagttt
tctgaagttaccaaacatctcctctcaaaacagatgcaccagcagagcatcctgaagact
gatgaactcatcactcgctttttccgactgtgcaccgagatgtgtgtggacctgtgttac
agagctcttagtgagcagactcataaccctactcttgttcgtgctaagtgctttcacaca
ttggatgcctatgttcgtcttattgctcttcttgtcaagcactcaggtgacacagccaac
accataaccaaaatcaaccttctgaataaggtgctgggaattgttgctggagtgctgctg
caggaccatgaggtgcgttacacagagtttcagcagctgccataccaccgcatcttcatc
atgctctttatcgagctgaatgcaccagagcctattcttgagagcatcaactaccaggtg
ttggctgccttctgccaagttttccatattctgaggccagccaaagcgccaggcttcgca
tatgcatggcttgagctgatctctcatcgtgttttcatcggccgcttgctggcactcaca
cctcaccagaggggttggggcatgtatgctcagctcctcatggacctcttcaagctgctg
gcaccatttctgcgtaatgcagacctcaacaaacccacacagctcctttacaagggtaca
ctgagggttttgctggtgcttctccatgacttccccgagttcttgtgtgactatcactac
acattctgtgatgtcataccaccaaactgcatccagatgcgcaatctggttcttagtgcc
ttccctcgccagatgcgactgcctgatcctttcacaccaaacctcaaggtggacaaccta
cctgacattacccaggcaccacgcatcctgaccaactatgttggcataattcagccacct
tccttcaaaaaggatctggaatcttacctcaagactcgctcacctatcacatttttgtct
gatttgaagagcaatctgcagtcttcagaatctggctgccattacaacatccagctgatc
aacgcccttgtgttgtatgttggcactcaggccatccagcatgtgcacagcaaggggcag
acgcctagcattagcaccattgctccatcatctcacatggacatctttcagaatctggct
gttaatcttgacactgaaggtcgctatctgttcctaactgccatatcaaaccagctgcga
tatcccaacagccacacgcactacttcagctgcacgcttctttacctgtttgcccaggcc
aacactgaagctattcaagaacagattaccagggttttgttggaacggcttattgtgaac
cgaccacacccatggggcctgctcatcacgttcattgaactcatcaagaatccgacatac
aaattctggaaccatgaatttgtgcactgtgcgcccgagattcagaagttgtttgagtcc
gtggctcgttcctgcatgcaaccaaagcagaccagtaatctgagggacccagataaccct
gccgaggctcattga
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integrated database retrieval system
