Phalacrocorax carbo (great cormorant): 104042835
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Entry
104042835 CDS
T08596
Symbol
LAMA5
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit alpha-5
KO
K06240
laminin, alpha 3/5
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao04382
Cornified envelope formation
pcao04510
Focal adhesion
pcao04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104042835 (LAMA5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104042835 (LAMA5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104042835 (LAMA5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_I
Laminin_B
EGF_LMN_ATRN
Laminin_II
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
104042835
NCBI-ProteinID:
XP_009500647
LinkDB
All DBs
Position
Unknown
AA seq
2875 aa
AA seq
DB search
MNFSYSPLLRNFTKATNIRLRFLQTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCV
CHGHADVCDAKDPNDPYRLQCDCQHNTCGGSCDRCCPGFNQFPWKPATADSANECQPCNC
NGHAYDXXXXXXXXRHKASRSHKDKFEGGGVCIDCQHHTTGINCERCIPGYYRSPDHPID
SPYICYRCNCESDFTDGTCEDLTGRCYCKPNYTGEHCDACAEGYLNFPHCYPIPAFTHND
TGEQVLPAGQIINCDCYAGGTEGNACRKDPRVGMCVCKPNFQGTHCDQCSPGHYGPSCQP
CQCSGPGQYDGTCDSETGQCLCRTGFEGHLCDQCAPGYFNYPLCQLCGCSVVGTLPGGCD
SAGRCFCRPEFAGPRCEQCSPEHHSYPHCYACSCDSRGAVDNNCSPAGQCRCHANFVGHT
CNQCALGFYGYPSCTPCQCSREGSLHSTCDQETGQCSCRPKVTGLRCDSCVPGAYGFPHC
EVGSCNPAGLVTADPSLAPGSCACRAYVEGPACDRCKPLYWNLTPENPYGCTSCRCDTKG
TISGTAECQQGNGQCFCKPNICGQFCSACKDGYFNMENANYFGCQGELPSXCVGXRRGPT
RADPGASGSAHTNXLPARDHYFPDLHHFRAGLEEGTTPAGRAVRFGYNPLEFEGFSWRGY
AQMSSIQPKVVVTLNVTSPDLFRLVFRYVSRGPASVEGRVSVVEEGKFNVCGNCTEQTKQ
IVFAPSTEPAFVTVPQNSFGEPFVLNPNTWSLVVEAEGVLLDYLVLLPSSYYEAPILQLK
VTEPCTYQPAPEQATQNCLLYKYLSVDGFPAASGVDAVCRLDNRLPRVCPTEQLSPSHPR
MAMCSGSDVDVQLSLPIAQPGKYVLVVEYANSNALQMVGIAVSSPHLAMQQATFIFYPCV
YSFLCRGIAVDSQSRVAQFELTSEATIRFTSDLADFFLHKVYLIPAAQFTMEFIEPKVHC
ISVHGTFSSNSSSCVPSRFLKLSQSIVLEGGQALPITPDVPLAQAVHVVPAGVPVEPAPR
PPTAVDPTAKLILLQPPQGTVVFNSRIQTLGRYAFILHYYQPNHPTFPVEVLINGGRIWQ
GQTNATFCPHGYGCRSLVVSEDQIILDVTDNDLTVIVRVPEGKQLWLDYILVVPEDSYSS
QYLQEEPLDKSYDFISSCGINSFYINPSTSSRFCRDSAISLSLFYNNGAQPCRCHEARAR
GSQSEPFGGQCPCKSNVIGRECSRCATGYWGVPKRRPCDCGTRLCDEVTGQCICPPHTLK
PECVVCEPQTFGCHPLIGCEDCNCSRPGVQELTEPGCDVDSGQCRCKPNIIGRQCDLCAP
GFYHYPNCQRCDCHQAGTEASVCDPVTGQCHCKENVEGPRCDQCRLGTFSLDASNPKGCT
KCFCFGATDRCRSAEKHRAEFVDMNGWLLMSSDRQEVPTTLNLREQLLHADLKNLLDAYQ
ELYWVAPSNYLGDRVSSYGGHLRYELHSDPRRGDVFIPMESRPDVILKGNQMSIMFLEGT
YPSPGEVHEGQVQLVEGNFRHTETHNPVSREELMMVLANLEQLQIRALFSQLSSSVSLRR
VVLEIATDTATGIRASNVELCFCPANYQGDSCQECAPGYYRDTKGLFLGKCIPCHCNGHS
DQCLPGSGICLNCQHNTEGDHCERCKDGYVGSHSAEEPLQCVGCPCPLSVASNNFAVGCV
HKGSNTQCLCKPGYTGPNCERCAPGYYGNPLVIGSSCQPCDCSGNTDPNMLFSSCDSLTG
ACTGCMHHTAGARCEVCTPGYYGDAVAAKNCTQCNCSPCGTESCHPQTGQCFCKTGVTGR
HCDRCECECRGGGCDHRGGGCTCSNGLTGKQCDVCTHDYEIPVANGPDSVRCEVCDSCVQ
LLLEDLQSIEMSFPSIRNQLVNLSASSIAWARLHGLNSTMVTIANQLREYQRAMNKVRQR
ADELEDENVDLTQDLNALQHKMTMTHREAKRIEQHTRETHQRGEHLLLNIQSIQKGIADL
VRQMARLGAANTSTTSTEEFRQKMAEVERMLREMKERSLGSQEELARREHEEAQKLLHQV
KSELHARWESNQDLVSSIRRDRLAQHSSQLMDLRDALNEAVNKTRQTEDLNSLNRNNLEE
SQQKSHELQKQHTLVQETLQMAKDSLAQVSDFLQKMESAKEAYEKLAALLDGAKLPLTER
VKKFSPASSKIPIVEQAEEHARLLDELARNLSSIIQDTNQDGFIQRAIDASNAYASIIEA
VKKAERAAHDADEAASKALMNVISENLGAISKELKRNSSNLEEAVRREQRKLNGAIKGAL
QTAKDKLADLRVKKEQLLSQLQSVQDMLGRDQEDTKKAIQNAKVAAAEANETAARVEDTL
STMKKNLDEWKDQYGDLRNEDLNQAVQDARKSVSSLESTIPLLLGKLSSLENRRNKNATV
SENIVRIRQLITQARNAASKVKVPMKFNGSSGVQVRMPSNLQDLAAYTSLKFYIQNPEPR
SRQQDGTEEGRFVLYLGSREATGDYLGIVLKDRKVQWVYKLGDEEPASLTVDEDIGEQFA
TISINRILQYGHMSVIVERQTVHETKGDSVAKGEQGLLNLDPHNVVFYMGGYPSSFTPPP
TLRYPNYRGCLELDTLNEEVVSLYNFQRTFQVDTTAEKPCARSKSTGDPWLTDGSYFDGT
GYAEIKFESQFGTTKRFEQEIRVVSYNGILFFLENQGQFLCLAIRDGKLVLYYDFSTGLE
MAKPSSNSSSLTISSTTNKAIQIFLLKMNNKKRILVRLERLTIFMVEQENSLENAVSYYL
GGVPPAVLPPSLKALFPTGGPIRGCMKGLKALGKYVDLKRMSTVGVSYGCTSDLLFRTSQ
REGLLYHHATQEGTCQVSLQRGQLTLNLLKTEVTTENAYADDRTHYVAFYSDAHG
NT seq
8624 nt
NT seq
+upstream
nt +downstream
nt
atgaatttctcctactctcctctgctgcggaatttcacgaaagccaccaacatcagactg
cgcttcctacagacaaacactctgcttggacacctgatgggcaaagctttaagggaccct
acagtgacaaggaggtattactacagcatcaaagacatcagcattggagggcgctgtgtc
tgccatggccatgcagacgtctgtgatgccaaagaccctaatgacccttacaggctgcag
tgtgactgccagcacaacacctgcggtgggtcctgcgatcgctgctgccccggcttcaac
cagttcccgtggaagcccgccactgccgacagcgcaaacgaatgccagccttgcaattgc
aacggccatgcctacgacnnnnnnnnnnnnnnnnnnnnnnatcgccacaaagccagcaga
agccacaaagacaagtttgaagggggaggtgtttgcattgactgtcagcaccacaccacg
ggcattaactgcgagaggtgcatcccaggatactaccggtcccctgaccacccgatcgat
tctccatacatttgctatcgctgtaactgtgagtctgacttcaccgatggcacctgtgag
gaccttaccggccgctgttactgcaagcccaattacaccggggagcactgtgatgcatgt
gccgagggatatctcaacttcccccactgctaccccattccagctttcactcacaacgat
accggagaacaagtgctccctgcaggacagataataaactgcgattgctacgccggtggg
acagaaggcaacgcctgtcgcaaagaccctcgggtggggatgtgtgtgtgcaaacccaac
ttccagggaacacactgtgaccagtgctctccaggccactacggacccagctgccagccc
tgccagtgctccggccccggtcagtatgatggcacctgtgacagcgagacagggcaatgc
ctgtgtcgaacaggatttgaagggcacttgtgtgaccagtgcgctcccggctacttcaac
taccccctgtgccagctatgcggttgcagcgtggtcgggacgctgccgggaggctgcgac
tccgccgggaggtgtttctgcagacccgagtttgctgggccgcggtgcgagcagtgcagc
cctgagcaccactcctaccctcactgctacgcttgctcctgcgattcccggggtgcggtg
gacaacaactgcagcccagctggccagtgccgatgccatgcaaattttgtgggacacacc
tgcaaccagtgtgccctgggcttttatgggtaccccagctgcacaccctgccagtgctcc
cgggagggctctctgcacagcacctgcgaccaggagacagggcagtgcagctgccgaccc
aaagtgacaggactgcgctgcgatagctgcgtgccgggtgcctatggatttccgcactgc
gaagtgggctcctgtaacccagcagggttggtgactgcagatccctcactggccccgggc
tcctgtgcatgtcgggcgtacgttgaaggcccagcttgtgacagatgcaagcccttatac
tggaacctgactccagagaacccctatggctgcacgagctgcaggtgtgataccaagggc
accatcagtggaactgcagagtgccagcagggcaatgggcagtgtttctgcaaaccgaac
atctgcggccagttctgctcagcgtgcaaagacggctacttcaatatggagaacgcaaat
tactttggctgccaaggtgagctcccttcatgatgtgttgggtgaaggagggggcccaca
agagctgaccctggagcaagtggctctgcacataccaactgactacccgcacgggaccat
tatttccctgaccttcaccactttcgagctgggctggaggaaggcaccacaccggccggc
cgggccgtgcggttcggctacaaccccctggagtttgagggcttcagctggcgaggatac
gcacagatgtcctccatccagcccaaggtagtggtgactctcaatgtgacctcccccgac
ctcttccgcctcgtcttccgctacgtcagccgggggcccgccagtgtggaagggagggtc
tcggtcgttgaggaaggaaagtttaatgtttgtggcaactgtacagagcagaccaagcag
attgtttttgctcccagcacggagccagcctttgtcaccgtcccccagaacagctttggg
gagcccttcgtactcaaccccaacacctggtctctggttgttgaagcagagggtgtgctg
ctggactatctggttttgctacccagctcatactatgaagctccaatactgcagctaaag
gtcacagagccatgtacctaccaaccagccccagaacaagccacccagaactgcctcttg
tataagtacctgtctgtggacggcttccctgctgcatcaggggtggacgcagtgtgcagg
ctggacaaccggttacccagagtgtgtcccacagagcagctcagcccctcccatccccgg
atggcgatgtgcagcggcagtgatgtggacgtccagctctccctgcctattgcccagcct
gggaagtacgtgctggtggtggagtacgccaacagcaatgctttgcagatggtgggcatt
gctgtgagctcaccgcacctagccatgcagcaggccacattcatcttctacccatgtgtc
tacagtttcctttgtcgagggattgctgtagattcccagagccgtgtggcacagtttgaa
cttacctcagaggctaccattcggttcacctctgatctggctgacttcttcttgcacaaa
gtgtacctcatacctgctgcacagttcaccatggagttcattgagccgaaggtacattgc
atcagtgtccacggcacgttctcatccaacagcagctcctgtgttccctcgaggttcctg
aagctttctcagtcaatcgttttggagggcggccaggctctgcccatcactcctgatgtc
cccctggctcaggcggtccacgtggttcctgctggggtcccggtggagcctgcacctcgg
cctcccacagcagtggatcccaccgcaaagctcatcctcctgcaaccaccgcagggcact
gttgtgtttaacagccggatccagacgctgggacgctatgctttcatcctacactactac
cagcccaaccatcccaccttccccgtggaagtgttaatcaatggtggccgtatctggcaa
ggtcagaccaatgctactttctgcccacatggctatgggtgccggagcctggtagtttct
gaggaccagattatcctggatgttaccgacaacgatctgactgtcattgttcgagtgcca
gagggcaagcagctgtggctggattacattcttgtggtgcctgaagacagctacagctct
cagtacctgcaggaggagcccctggacaagtcctatgatttcatcagcagctgtggcatc
aacagcttctacatcaaccccagcacatcgtcgaggttctgccgtgactctgccatctcg
ctctccctcttctacaacaacggggcacagccctgccggtgccacgaggcaagggcacgg
ggcagccagagcgagcccttcggcgggcagtgtccctgcaagtccaacgtcatcgggcga
gagtgctcccgctgtgccaccggctactggggcgttcccaaacggaggccctgcgactgt
gggacacgtctctgcgatgaagtgacaggtcagtgcatctgccctccgcacaccctgaag
ccggagtgcgttgtctgcgagccccagaccttcggctgccaccccctcatcggctgcgag
gactgcaattgctctcggcccggcgtgcaggagctgacagagccgggctgcgacgtggac
agtgggcagtgcaggtgcaagcccaatatcatagggcgacagtgtgacctctgcgccccg
ggcttctaccactaccccaactgccagcggtgtgactgccaccaggctggcactgaagca
agcgtgtgcgacccggtcacagggcagtgtcactgcaaggaaaatgtggagggtccaagg
tgtgaccagtgccgcctggggacgttttctttggatgccagcaaccccaagggctgcacc
aagtgtttctgctttggcgcgaccgatcgctgccgcagcgctgagaagcaccgagctgag
ttcgttgacatgaacgggtggctcttgatgagcagtgaccgccaggaggtgccaacgact
ctgaacctgcgggagcagctcctccacgcagatctcaagaacctcctggatgcctaccag
gagctctactgggtcgcacccagcaactacctcggggaccgggtttcctcctacggtggg
cacctgcgctacgagcttcactctgacccacggaggggtgacgtcttcattcccatggag
tcccgcccagacgtgatcctgaagggaaatcagatgagcatcatgtttctggaaggcacc
tacccttccccaggggaggtacatgaaggccaggtgcagctggtggagggtaacttcagg
cacacagagacgcacaaccctgtgtctagagaggagctcatgatggtgctggcaaacctg
gaacagctgcagatccgggcactcttctcccagctctcttcctccgtgtctctgcgccgc
gtggtcctggagatagcaacagatacagctacgggcatccgcgccagcaacgtggagctg
tgcttctgcccagctaactaccagggggactcctgccaggaatgtgctccaggttactac
agggacaccaaggggctctttctgggaaaatgcatcccgtgtcattgcaacggccactcg
gatcagtgcctgccgggctctgggatatgccttaactgccagcacaacacggagggagac
cactgtgagcgatgcaaggatggctacgtgggcagccactctgccgaagaacccctacag
tgtgttggatgtccgtgccctctttcagttgcctccaacaattttgccgttggttgtgtc
cacaagggatccaacacacagtgcctctgcaagcccggctacactggacccaactgtgag
cggtgtgccccaggatactacggcaatcccttggtgataggcagctcgtgccagccctgt
gactgcagcgggaacacagatcccaacatgctgttcagtagctgcgactccctgaccggc
gcctgcacggggtgcatgcaccacacggctggcgcacggtgtgaggtctgcacccccggc
tactacggggatgcggtggcagccaagaactgcacgcagtgcaactgctcgccttgtggg
acagagtcgtgccatccgcaaactggccagtgcttctgcaagactggagtgacgggccgg
cactgtgaccgctgcgagtgtgagtgcagaggaggcggctgcgaccaccggggcgggggg
tgcacctgctccaacgggctgacagggaagcagtgcgacgtctgcacgcacgactacgag
atccccgtggcaaatggtccagacagtgtgaggtgtgaagtgtgcgacagctgtgtccag
cttctgctggaggatctgcagagcatcgagatgtccttcccctccattcgcaaccagctg
gtcaacctcagtgccagctccatcgcctgggctcgcctccacggtctgaacagcactatg
gtgaccatcgctaaccagctgcgtgagtaccagagagccatgaacaaggtcaggcaaagg
gctgacgagctggaggatgagaacgtggacctcacacaggacctgaacgcgctgcagcac
aaaatgacgatgactcacagagaagcaaaacggattgagcagcacacgagagagactcac
cagagaggggagcatctcctgctaaatatccaaagcattcagaaaggcattgcagacttg
gtgcggcagatggccaggcttggggcagcaaacaccagcaccacctccactgaggagttt
cggcagaagatggccgaggtggaaagaatgttgagggagatgaaggagcggagtctgggc
agccaggaggagcttgcaaggcgcgagcatgaggaggctcagaagctgctgcatcaggtg
aagagcgagctgcacgcccgctgggagtccaaccaggacctggtgagcagcatccggcgg
gaccggctggcgcagcacagctcccagctgatggatctccgtgacgccctcaatgaggct
gtgaacaaaaccaggcagacggaggacttgaacagcctgaaccgcaacaacctggaggag
agtcagcaaaagagccatgaactccaaaagcagcacacgctggtacaggagaccctgcag
atggccaaggactctctggcccaggtctctgacttcctgcagaagatggagagtgcaaag
gaggcatacgagaagctggcagccctcctggatggggcaaagctgcccctgaccgagcgg
gtcaagaagttctccccagccagcagcaagatccccatcgtggagcaggcagaggagcat
gcccggctcctcgatgagctcgcaaggaacctgtccagcattatccaggacacaaaccag
gatggctttatccagcgggcgattgacgcctctaatgcctacgccagcatcattgaagct
gtgaaaaaagctgagcgagcagcccacgatgctgatgaggcagccagcaaggctttgatg
aatgtcatatcagaaaatctcggggccatctctaaagagctgaagaggaacagcagcaac
ctggaggaggctgtgaggagagagcagagaaaactcaacggggctattaagggcgctctg
cagacagcaaaggacaagctggctgacctccgtgtgaagaaggagcagctcctgagccag
ctccagtctgtgcaggacatgctgggcagggaccaagaggacacaaaaaaggcaatccag
aatgccaaagtggcagctgctgaggccaacgaaacagctgcgagagtggaagataccctg
agcaccatgaagaagaatctggatgagtggaaagaccagtatggagaccttcgaaatgaa
gacctgaatcaggcagtccaggatgccaggaaatctgtgtccagcctggaaagcaccatc
ccgctgctgctggggaagctgagcagcctagagaacaggaggaataagaatgccaccgtg
tcggagaacattgtacggatccggcagctcatcacgcaggcgagaaatgccgccagcaag
gtgaaagtccccatgaagttcaacggcagctcaggtgtgcaggtccggatgcccagcaac
ctgcaggatttggcagcctatacatccctaaaattctacatccaaaaccctgagcccagg
agccggcagcaggacgggacagaggaggggcggtttgtgttgtacctgggcagccgggag
gccactggagactacctgggcatcgtgcttaaggaccgcaaagtgcagtgggtctacaaa
ctgggcgatgaggagccagcctccctaaccgttgacgaggatattggagagcagtttgcc
accatcagcatcaacaggatcctgcagtatgggcacatgtcggtgatcgtggagaggcag
acggtgcacgagaccaagggagacagtgtggccaagggggagcaggggctgctcaacctc
gacccgcacaacgtggtcttctacatgggtggctacccttccagcttcacgcctcctccc
actttgcgctatcccaactaccgcgggtgcctggagctggacacactgaatgaggaggtg
gtgagcctgtacaacttccaacgcaccttccaggtggataccactgccgagaagccctgt
gcaaggtccaagtcaacaggagacccttggttgactgacggctcctactttgatggcact
ggttacgcggagatcaagtttgagagccagtttggcacaaccaagcgcttcgagcaggag
atccgggtggtctcctacaatggcatcctcttcttcctggagaatcagggccagttcctg
tgtctggccatccgggatgggaagctggtgctttactatgacttcagcaccggcctggag
atggcaaaacccagcagcaactcctcctccctcaccatcagcagcaccacaaacaaagcg
atccagattttcctcctcaaaatgaataacaagaagcgcatcctggtgcggctggagcgc
ctcaccatcttcatggtggagcaggagaactccctggagaacgctgtctcttactacctg
ggtggtgtgcccccagctgtgctgccccctagcttgaaagcgctcttccccacgggtggg
cccatccgaggctgcatgaagggcttgaaggctctcggcaaatacgtcgacctgaagcgc
atgagcactgtcggtgtgagctatgggtgcacctcggacctcctgttccggacgagccag
cgcgaggggctgctctaccaccacgccacccaggaggggacgtgccaggtgtccctccag
aggggccagctgaccttgaacttgctgaaaactgaagtcaccactgaaaatgcctatgca
gatgacaggacccactacgtggctttctacagcgatgctcatgg
DBGET
integrated database retrieval system
