Phalacrocorax carbo (great cormorant): 104043959
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Entry
104043959 CDS
T08596
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104043959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcao03019
]
104043959
Messenger RNA biogenesis [BR:
pcao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
104043959
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_11
TPR_14
TPR_12
TPR_8
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_9
ANAPC3
ARM_TT21_C
TPR_15
TPR_MalT
BTAD
TolB_N
Retrotran_gag_2
ARM_TT21
TPR_5
TPR_20
Motif
Other DBs
NCBI-GeneID:
104043959
NCBI-ProteinID:
XP_009501997
LinkDB
All DBs
Position
Unknown
AA seq
1227 aa
AA seq
DB search
LEALGTPEGPSLRWKNLTLQLKAEALIKKADADAAEEAIKALDQVVDASSDPVLLAIRGQ
AYLKKGLMDQASKISQELLLSHPDLAESHALEGFIHYSQKDYEQAERSFLNAIERNAETA
EYHQYLGLTYWFMSDETKKDKGKALTQFLKAAKLDSYLGSVFCYLGNYYRDIAGDKSRAR
GCYKKAFELDGTDEESGTAAVDISVELGDMDAALSILNEVTEKASPGTAKWAWLHRGLYY
LRTGQPSQAVADLQAALRADPKDSNCWESLGEAYLSRGSYSTALKSFRKASELNPELVYS
IYMAAAVEQILGKYENAIATYQQILKKTEDYVPALKGLGECYLMLGRSALDNYLDRKALD
YIEQALEFFTSATKHRSDVSCLWKLLGDTCTSVHVISPAKVNVQVLGSLLAKNASKQKLN
KIELLRLGGRCYGRALKLMPLPSIWCDLGINYYRQAEHLTAVGTDMNEISDLLEKSLQCL
KKAVRLDSKNHLYWNALGVVASCSAIGNYALAQHSFIKSVQAEKINVVAWTNLGVLYLVT
GNIEQAHEAFKVAQSLEPSYLLCWIGQALIAEKVGSYDTMDLFRHTTELSMHTEGAKGYA
HWVCSTLQDKSNRNTELYQYSIVQMNAIPAAQVVLSKYTERNPDDASAFTMLGYLNEYLQ
LKKQATDAYERAASLLKNSEDTEKYNMAMQNYGRLLCALGQCDKAIEVYTSTPLTEFNSL
VGVALAYFKKGLLQESIKAYEKALSLAESEQDKAHILTALAIIEYKQNKVDAAKTLLFKC
SLKEPNTESLKALCTLGLVKEDATLATAALKELLKHEKGGDSIYERCLIASAVYALQGRS
VEVQRQVSKAIHSNPDNPALWSLLSRVVPLYASQKAKGGAVAGNIAQVLDVNHGKEVLLY
TTVNHLAAGCSMLEDEKNNPLKNIQKAIHLCPDNPAAWAVLMAACHAENTVVCLNNTQPK
RTDLEMTLVSRVSAKTGGNNLPNNYIRALEDWCLCQAVTSLEETGKLSEAEALCTKGLKS
CPEHPALFLLLRQVQCKQLLQSHKELPDTVLEELHKAVMTSSTSVTAWQWLAKVYQSQRM
MVGAEMCYRKSLQLASQQGSWNGKLSSLLRLAMLALEICMTAASNEHWPSLVQEATTEAL
KLSSCPLAALLQALLQYNRKMGARETRRMLXYQPGNPETIASVARWYLLKHLYAKDDYEL
IDVLLENAKANGDVRALELNQKLSASA
NT seq
3686 nt
NT seq
+upstream
nt +downstream
nt
ctcttgaggctcttggaactcctgagggtcctagtcttcggtggaagaaccttacccttc
agttgaaagcagaggctttgattaaaaaagctgatgctgatgcggcagaagaagccatca
aagcacttgatcaggtggtggatgcaagcagtgatccggtgcttttagctatcagaggtc
aggcttatctaaagaaaggtttaatggatcaagcttccaagatttcacaagagcttctgt
tgtcccaccctgatctggctgagtcccacgctctagagggttttatccattattcccaaa
aggactacgaacaggcggaaagaagttttctaaatgctattgaaagaaacgccgaaactg
cagagtatcatcagtacctggggctcacatactggttcatgagtgatgagacaaaaaaag
acaaaggaaaagcactcactcagttcttgaaggctgcaaaactggacagctacttgggaa
gtgtcttttgttatttaggtaactactacagagacattgctggagataaaagtagagctc
gcggttgctataaaaaggcttttgaactggatggcaccgatgaagaatctggaacagcag
ctgtagacataagcgtggagcttggagacatggacgctgctctgtcaatcctgaatgagg
taactgaaaaagcgagtcctggtacagccaaatgggcctggcttcatcgtggactttatt
acctgagaactggtcagccatcacaagcggtggccgatttgcaggcagctctcagggctg
atccaaaggattccaactgctgggagtctctaggggaggcatacctgagcagaggtagct
attcaacagctctaaaatccttcaggaaagcaagtgagctgaacccagagctcgtgtaca
gcatttacatggctgcagcagttgagcagattctaggcaaatacgaaaatgctatagcta
cctatcaacaaatcttaaagaagacagaagactatgtgcctgcccttaaaggacttggtg
agtgctatctcatgctggggagatcagcccttgataactatcttgacaggaaggctttgg
attacatagagcaggctcttgaattttttacaagcgcaacaaagcaccgttctgatgtat
cttgcctctggaaactgctcggagatacctgtactagcgtgcatgttatttcaccagcca
aagtgaatgttcaagtcctaggatcccttctggctaaaaatgcaagcaaacagaagctga
ataaaattgagctgctcagactgggaggaaggtgttacgggagagctctaaaactgatgc
ctttgcctagcatatggtgtgatcttggaataaattattatcgacaagcagagcacctca
cagcagtgggcactgacatgaatgagatcagtgatctgctagaaaagtctctacagtgtc
tcaaaaaagctgtgaggcttgacagcaaaaaccatctttattggaatgcacttggtgtag
ttgcttcctgtagtgctattgggaattatgctcttgctcaacattcgttcatcaaatctg
tccaagctgagaaaatcaatgttgttgcctggaccaacttgggcgttttgtatctggtga
ctggaaatattgagcaagctcatgaagccttcaaggtagcccagtctctggagccttcct
acttactgtgctggattggccaggctctaattgcagagaaggtgggcagctatgacacta
tggatctcttcaggcacaccactgaactcagtatgcatactgagggagcgaaaggctacg
cacactgggtgtgttcaacgctgcaggataaaagcaacagaaacactgagctataccagt
acagcattgttcaaatgaatgctattccagcagcccaggtggtgttgagcaaatatacag
aaagaaatccagacgatgcatctgctttcacaatgcttggttatttgaatgagtatctgc
agctgaaaaagcaagcaacagatgcctatgagagggcagcttcattgctgaaaaactctg
aggatactgagaaatataatatggcaatgcaaaactatggcaggttactgtgtgctcttg
gtcagtgtgataaggctattgaggtctacacatcaacacccctgactgagttcaacagcc
tggttggggtagcattagcctacttcaagaaaggactcttacaagaaagtatcaaagcct
atgaaaaagctttgtctcttgctgagtctgaacaagataaagcacatattctgactgcct
tggcaataatagagtataaacagaacaaagtggatgctgcgaagacactgctgtttaaat
gctcattaaaggaacctaatacggaaagtctgaaggctttgtgcacgctaggactggtaa
aggaggatgctacgcttgcaacagcagccctaaaagaattactgaagcatgaaaaaggag
gtgatagcatttatgagaggtgccttattgcatctgctgtttatgcattgcaaggtagaa
gtgtggaggtccagagacaagtctccaaagcaatacatagtaacccagataatcctgccc
tctggtctcttctgtctcgagttgttcctctgtatgcatcacaaaaggcaaaagggggag
ctgtggcaggaaacatcgcacaagtacttgatgtaaaccatggaaaggaagtcctgctgt
atactacagttaaccatctggcagcaggatgttcaatgttagaagatgagaaaaacaatc
ctctgaaaaatattcagaaggccatccacctctgtccagataatcctgctgcctgggcag
tgctaatggcagcttgtcacgctgaaaacaccgttgtctgtctaaataacactcagccga
agcgaacggatctagagatgacacttgtatctagagtttcagcaaaaactggaggaaata
accttccaaataattatatccgggctcttgaagactggtgtctgtgtcaagctgttacca
gtctagaagagactggtaagctctcagaagccgaagctctttgcaccaagggtttaaaaa
gctgccctgagcacccagctctgtttttgcttttgagacaagttcagtgtaagcagctgt
tgcagtctcacaaagaacttccagacaccgtcctggaggagcttcacaaggcggttatga
ccagttcaacttcagttacagcctggcaatggctggcaaaagtatatcagtcccaaagaa
tgatggttggagcagagatgtgttacagaaagagtctgcaattggcatcacagcagggca
gctggaacgggaagttgtcgagcctgctcaggctagctatgcttgcactggaaatctgca
tgactgctgcctcaaatgagcactggccatccttggtccaggaggcaacaactgaagctt
tgaaactttcttcttgccccctggcagctctactacaagcactgctgcagtataatcgca
aaatgggagcaagggagactcgtcgaatgttgngttatcaaccggggaatccagaaacca
tagcgtcagtggcacgctggtacctcctgaaacatctgtacgccaaagacgattatgaat
taatagatgtgcttttagaaaatgccaaagctaatggagatgttagagctctggaactaa
accagaagttgtcagcaagtgcctag
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integrated database retrieval system
