Pseudoalteromonas carrageenovora: PC2016_1893
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Entry
PC2016_1893 CDS
T06565
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC2016_1893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcar03019
]
PC2016_1893
03009 Ribosome biogenesis [BR:
pcar03009
]
PC2016_1893
Enzymes [BR:
pcar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PC2016_1893
Messenger RNA biogenesis [BR:
pcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PC2016_1893
Ribosome biogenesis [BR:
pcar03009
]
Prokaryotic type
rRNA processing factors
PC2016_1893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QBJ72097
LinkDB
All DBs
Position
I:2151156..2154395
Genome browser
AA seq
1079 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GADRHGFLPLKEIARTYFPQGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWDAIKQAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAARPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETP
HYEVMRLRKDETLETVSYEQVVAPEPEAFEMSKSPSAPVREEPMLKGVVMPSTPAPQAAP
AKAVAPAAPVQTKTEGGLLAAIGNWFKSLFASESEEEKKAAVEKQQQETRNNNNRRGNDN
RRRNNNQRRRNNPRSKPRNERQSAEEEVKTDSTATNETPERNENRNKRRRNPNSRKRPEH
KNADQAKADTTAKADTDSKPVQAAEPKEQKPKVRRQRRNVRKKVRVQDESVEQATTTTEQ
TSEQSVVADKPQTKEQTPVVEKQTQAPAETVEAKPAKVEEAPVKEEKVATVESTDEAVNA
DDEQGQTRTRSRRSPRHLRASGQRRRRPEGEAEVKSDDAPAFVPVADQAAAEYEAELKAK
SEETPVDASQQVEQAIAAEDLAKVEAVQDEQPAQAEEPEVTEQPAKAEEPVATEQPAKVE
EPVATEQPAKVEEPVATEQPAKVEEPVATEQPAKVEEPEVTEQPAKVEEPVVTEQPAKVE
EPVATEQPAKVEEPVATEQPTKVEEPVVSEKPAKVEEPVATEKPAKVEAVANAKTVIVKG
AASAPMAQPTPVADSEVKHTSVAMAHDKRDLVPDSGLRAGSVKPAGRASSAMTKTMSAD
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcaacgcagcaagaagaaatgcgcgtagcactggttgat
ggccaacgcctttatgatttagatatcgaaagcccaggtcacgaacagaaaaaagccaat
atttacaaaggcaaaatcactcgcattgaaccatctcttgaagcggcatttgttgactac
ggtgctgaccgccatggtttcctccctttaaaagaaattgcccgtacatacttcccacaa
ggttatactttccatggtcgtccgaacattcgtgacgtgatcaaagaaggtcaagaagta
atagtacaagttgataaagaagaacgcggccaaaaaggcgcagcgctaactacttttatc
agtgttgcaggtagctatttagtccttatgccaaataaccctcgtgctggcggtatttct
cgtcgtattgaaggtgatgagcgtactgaactaaaagaagcacttagccgcctagaactt
cctaaaggtatgggcttaatagttcgtacagcgggtgttggcaaatcatttgaagaactt
aactacgatttaaaagcattattagtgcattgggatgcaattaaacaagcagccgatagt
gctaaagcgccgtttttaattcaccaagaaagtaatgtaattttccgtgcaatacgtgat
tatttacgtcgtgatattggcgaaatattaattgataaaccacgtgtttttgaagaagct
aaagcgcacattgagcgttttcgccctgactttatgagccgtgttaagctttatcaaggt
gacacgccgttatttacgcattaccaaattgaaagccaaattgagtctgcgttccaacga
gaagttcgtctaccgtctggtggttcaattgtaattgacccaactgaagcacttacttca
atcgatatcaactcgtctaaagcaacaaaaggcggcgatattgaagaaacagcactaaat
accaacctagaagcagcagacgaaattgcacgccaattacgcttacgtgatttaggtggc
ttaatcgttatcgacttcattgatatgacacctccacgtcatcaacgcgaagttgaaaac
cgattaaaagatgctgctcgaccagatcgtgctcgcgtacaaataggcaaaatctctcgc
tttggtttactagaaatgtcgcgccagcgtttgcgtccttcattaggtgaagcaagccag
ggcccgtgtccacgttgtagcggccaaggtactattcgttctaacgaatcaattgcactt
tctattcttcgcttaattgaagaagaagcaattaaagacaacacagcacaagtaaatgca
caagtgcctgttgctgttgctgcttatttgttaaatgagcaacgtcgaagcgttcaccgt
attgaaaagcaccacaaatgtgatgttgtgattattcctaatcaacacatggaaacacca
cactacgaagtaatgcgtttacgtaaagacgaaacacttgaaacagtaagttacgagcaa
gttgttgcaccagagcctgaagcattcgaaatgtctaagtctccttctgcaccagtacgt
gaagagcctatgttaaaaggcgttgtaatgccttcaactccggctccacaagctgcgcct
gcaaaggcagtagcacctgctgcgccagtacaaactaaaactgaaggtggcttattggct
gctatcggtaattggtttaagtctttatttgcaagtgaatctgaagaagagaaaaaagca
gcagttgaaaaacagcagcaagaaactcgcaataataacaaccgtcgtggtaacgataat
cgccgccgtaataacaatcagcgtcgtcgtaataacccacgttcaaaacctcgcaacgag
cgccaaagtgctgaagaagaagttaaaacagactcaacagcaactaatgagactccagaa
agaaacgaaaatcgcaacaagcgacgtcgtaaccctaactctcgtaagcgccctgagcat
aaaaacgcagatcaagcaaaagcagatacaactgcaaaagctgatactgattctaagcct
gtacaagctgcagaacctaaagagcaaaagccgaaagttcgtcgccaacgtcgtaacgta
cgtaaaaaagtacgtgtacaagatgaaagcgtagagcaagcaactacaacaacagagcaa
acatctgagcagtctgtagtagctgataagccgcaaactaaggagcaaacgccagtagtt
gaaaaacaaactcaagcgcctgctgaaacagttgaagctaaaccagctaaggttgaagag
gcacctgttaaagaagaaaaagtagcaactgtagaatctactgatgaagctgtaaatgct
gatgatgagcaaggccaaacacgtacacgttcacgccgttctcctcgtcaccttcgtgca
tcgggtcaacgccgtcgtcgtcctgaaggcgaagcagaagttaaatctgatgatgcgcct
gcatttgtacccgttgctgatcaagcggctgctgagtatgaagcagaactaaaagctaaa
tcagaagaaacccctgttgatgcttcacagcaagttgaacaagctattgcagctgaagac
ttagcaaaggttgaggcagtacaagatgaacaaccagctcaagctgaagagccagaagta
actgagcaaccagctaaagctgaagagcctgtagcaactgagcaaccagctaaagttgaa
gagcctgtagcaactgagcaaccagctaaagttgaagagcctgtagcgactgagcaacca
gctaaagttgaagagcctgtagcaactgagcaaccagctaaagttgaagaaccagaagta
actgagcaaccagctaaagttgaagagccagtagtaactgagcaaccagctaaagttgaa
gagccagtagcaactgagcaaccagctaaagttgaagagccagtagcaactgagcaacca
actaaagttgaagagcctgtagtatctgagaaaccagctaaagttgaagaaccagtagca
actgagaaaccagctaaagttgaagccgtggctaacgctaaaacagtaatagttaaaggt
gctgcaagtgcaccgatggctcaacctactccggttgctgatagcgaagttaaacacaca
tctgttgcaatggctcacgataaacgtgacctagtgccagacagtggcttacgtgcaggg
tcagttaagcctgcaggtcgtgcgagttctgcaatgactaaaacaatgagtgctgattaa
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