Persicimonas caeni: FRD00_29185
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Entry
FRD00_29185 CDS
T06769
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcay
Persicimonas caeni
Pathway
pcay03030
DNA replication
pcay03410
Base excision repair
pcay03420
Nucleotide excision repair
pcay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRD00_29185 (ligA)
03410 Base excision repair
FRD00_29185 (ligA)
03420 Nucleotide excision repair
FRD00_29185 (ligA)
03430 Mismatch repair
FRD00_29185 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcay03032
]
FRD00_29185 (ligA)
03400 DNA repair and recombination proteins [BR:
pcay03400
]
FRD00_29185 (ligA)
Enzymes [BR:
pcay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FRD00_29185 (ligA)
DNA replication proteins [BR:
pcay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FRD00_29185 (ligA)
DNA repair and recombination proteins [BR:
pcay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FRD00_29185 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRD00_29185 (ligA)
MMR (mismatch excision repair)
DNA ligase
FRD00_29185 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRD00_29185 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
HHH_5
HHH_2
DNA_ligase_OB
BRCT
HHH
RHS_repeat
Motif
Other DBs
NCBI-ProteinID:
QED35892
LinkDB
All DBs
Position
7847071..7849068
Genome browser
AA seq
665 aa
AA seq
DB search
MTESAVANDWASMTVAELEDAVKRHNRLYWVDNDPQISDPEFDRLVEALRTKKPDSPVLA
AIGPVGAGVDLSEHLQGEQQVPHDPPMLSLDKCYDEETLLKWFEKFEGTAVASPKIDGVA
VSLRYDADGRLFVAATRGTGRVGELITGNVMRIENVPRTIDTHDIEVRGEAYMPLSVFEE
RFKEEYSSPRNLTAGALKLKNPQETAGYGVRFFAYDVLGVAFDTEADKMTWLEELGFDTV
DWREVDKPKLQHTFDEIDASRRARDYEMDGVVYRANSCEEQRRMGHTAHHPRYSIAYKFQ
GDSGESVLREVHWNVSRTGAINPVGIVDPVELSGAVVTRVSLHNLAIMEAVAGEEGLTLN
SRVLMMRRGGVIPHMEKVLERGDELVEIPSECPGCGADTYRDNDVLCADHSADCRNARLR
QLEHFASAMEIKGIGPKLLEQLHDAELVTDPSDFFTLSLEELTSLERVGEKLARKLLDRI
KERRTVRVDVFLRALGIDELGRHVAELLAEEFGSLDEILNVDAEALVEIPTIGEIIAEKV
TEGFEKHAAVIASLRDHLDIVFPEPAPDPAEIDSPVAGKSFLFTGALESMSRKDAQGRVR
ELGGDTPSSVTKTLDFLVMGDADIERFEGGWRSSKLKKAEKYNNDGSSIAIIGESAFLEL
LDSDE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagtcagctgttgccaacgattgggcgtccatgacggtcgccgagctcgaagac
gccgtgaaacggcacaaccgtctgtattgggtggacaacgacccgcaaatcagcgacccg
gagttcgaccggctcgtcgaggcgttgcgcaccaagaaaccggacagccccgtgctcgcc
gcgatcggtccggtcggcgccggcgtcgacctctccgagcacctgcagggcgagcagcag
gttccgcacgacccgccgatgctctcgctcgacaaatgctatgatgaggaaaccctcctc
aagtggttcgaaaaatttgaaggcacggcggtggcgagccccaagatcgacggcgtggcg
gtcagcctgcgctacgacgcagacggccgcctcttcgtggccgccacccgcggcaccggg
cgcgtcggcgagctcatcacgggcaacgtgatgcgcatcgaaaacgtgccgcgcaccatc
gacacgcacgacatcgaggtgcgcggcgaggcctatatgccgctgtcggtcttcgaggag
cgcttcaaggaggagtactcgagtccgcgcaacctgaccgccggggcgctcaagctcaag
aatccgcaggagacggccggctacggcgtgcgcttcttcgcctacgacgtgctcggggtg
gccttcgacaccgaggccgacaagatgacctggctcgaggagctcggcttcgacacggtc
gattggcgagaggtcgacaagcccaagctgcaacacaccttcgacgagatcgacgcgagc
cgccgcgcgcgcgactatgagatggatggcgtggtctaccgggcgaactcctgcgaggag
cagcgccgcatggggcatacggcccatcacccgcgctactcgattgcgtacaagttccag
ggggattcgggcgagagcgtgcttcgggaggtccactggaacgtctcgcgcaccggcgcc
atcaacccggtcggtatcgtcgacccggtcgagctctccggggcggtggtcacgcgggta
agcctgcacaacctggcgatcatggaggcggtggccggcgaagaaggcctgacgctgaac
tcgcgcgtgctgatgatgcgccgcggtggggtcatcccccacatggagaaggtcctcgag
cgcggcgacgagctcgtcgagattccgagcgagtgccccggctgcggcgccgatacgtac
cgtgacaacgacgtgctttgcgccgaccacagcgccgactgtcgaaacgcgcggcttcgt
cagctcgagcacttcgcgagcgccatggagatcaaaggcatcggcccgaagctgctcgag
cagctccacgacgccgagctcgtcaccgacccgtccgacttctttacgttgtcgctcgag
gagctcacgtcgctcgagcgtgtgggcgagaagctggcgcgaaagctgctcgatcgcatc
aaggagcggcgcacggtgcgtgtcgacgtctttttgcgcgcgctgggcatcgacgagctc
ggccgtcacgtcgccgaattgctcgccgaagaattcggcagcttggacgagattttgaat
gtcgacgccgaggcgctcgtcgagatcccgacgattggcgagatcatcgccgagaaggtg
accgagggcttcgagaagcacgctgcggtgatcgcctcgctgcgcgaccacctcgacatc
gtctttcccgagccggcgcccgacccggccgagattgactcgccggtcgccggcaagtcg
tttttgttcaccggcgcgctcgagtcgatgtcgcgcaaagacgcccaggggcgtgtgcgc
gaactcggcggcgacacgccctcctcggtgaccaagacgctcgactttttggtgatggga
gacgccgatatcgagcgcttcgaagggggctggaggagcagcaagctcaagaaagccgag
aagtacaacaacgacggttcgtcgattgccatcatcggcgagtctgcgttcctggagttg
ctcgactcagatgagtga
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