KEGG   Piscinibacterium candidicorallinum: ACMDW7_09335
Entry
ACMDW7_09335      CDS       T10926                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pcaz  Piscinibacterium candidicorallinum
Pathway
pcaz02024  Quorum sensing
pcaz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcaz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACMDW7_09335 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ACMDW7_09335 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcaz03019]
    ACMDW7_09335 (hfq)
   03036 Chromosome and associated proteins [BR:pcaz03036]
    ACMDW7_09335 (hfq)
Messenger RNA biogenesis [BR:pcaz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ACMDW7_09335 (hfq)
Chromosome and associated proteins [BR:pcaz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ACMDW7_09335 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SRP14
Other DBs
NCBI-ProteinID: XOD95353
LinkDB
Position
complement(2073040..2073282)
AA seq 80 aa
MNKGQALQDPFLNQLRKEHVPVSIYLVNGIKLQGHIESFDQYVVLLRNTVTQMVYKHAIS
TVVPARAVNFSTDGGSEAAS
NT seq 243 nt   +upstreamnt  +downstreamnt
atgaacaaagggcaagcgctacaagacccgttcctcaaccagcttcgtaaggagcatgtc
ccggtctccatctatctggtgaacgggatcaagttgcagggccacattgaatcgttcgat
caatacgtggttctgcttcgcaataccgtcacccaaatggtctacaagcacgccatcagc
accgttgtgcccgcacgtgccgtgaacttcagcacggatggtggtagcgaagccgcatcg
tga

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