Plasmodium chabaudi: PCHAS_1002300
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Entry
PCHAS_1002300 CDS
T01108
Name
(RefSeq) pre-mRNA-splicing factor CLF1, putative
KO
K12869
crooked neck
Organism
pcb
Plasmodium chabaudi
Pathway
pcb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PCHAS_1002300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcb03041
]
PCHAS_1002300
03036 Chromosome and associated proteins [BR:
pcb03036
]
PCHAS_1002300
Spliceosome [BR:
pcb03041
]
Complex B
Other components
Prp19-related factors
PCHAS_1002300
Complex C
PCHAS_1002300
Chromosome and associated proteins [BR:
pcb03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
PCHAS_1002300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
TPR_14
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
Suf
TPR_19
HAT
ARM_TT21_2nd
TPR_17
Motif
Other DBs
NCBI-GeneID:
3498721
NCBI-ProteinID:
XP_016655480
UniProt:
A0A077YDA8
LinkDB
All DBs
Position
10:complement(94595..97373)
Genome browser
AA seq
678 aa
AA seq
DB search
MYTNSKNVQVKNKNAADVQITAEQLIKEALDFEEVEKKVNYNLIDEDELNEYKISKRKEF
EDSIRKRRYLINTYIKYALWEIKQKDIKRCRSIFERALNIDYTNKNLWLKYIEVELTNKN
INSARNLLERVVLLLPLENIFWKKYAHLEEILNNFVNARNIYERWVKWKIDETAFLCYIN
FEERCKEINKCREIFERLIVSIPKLECFYRFIKFEKKYKNISRARACYEKCIELLPSQFL
DQHFYIHFSKFEEENNEYERCRKIYIEALKRLPRENSDILYKNFLQFQKKYSEKEELDQT
LLYNERINFEEALKKTPNDYDIWFNYIKLEEQNINLINKEKSIIRIRELYERAISIIPQI
CTKKYWKRYIYLWINYSVFEELYADNIDRARKVYSNIFKILSKQNFTFKKIYILYANFEI
RQMDIDKVRAIFNHAIENVKNEKIFQEYCDMELRLGNVKECRTIYSKYVEAFPFNSKAWI
AMINFELSLDEIERARQIAEIAIHIDDMKLPELIWKTYIDLEINLQEYENASKLYERLLN
ITQHYKVYKSYAEFQYVYLDNISKCREILENGIEFCKKNELTNERSILLNFLYEIEKDHG
DNEIIEKTLKRLPKKVKKKKIIKSNDDEVVEEFITYVFPDDKAQSQNMKILQKAMEWKKK
MEKHEKEQKNEKESPQEI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtatacaaacagtaaaaacgttcaggtcaagaataaaaacgccgcagatgtgcaaatt
acggcagagcaactcattaaagaagcattagactttgaagaggttgagaaaaaagtaaat
tacaatttaatagatgaagatgagctaaatgaatataaaatttctaagcgaaaagaattt
gaagactcgataagaaaaagacgatatttaataaatacatatataaaatatgcattatgg
gaaattaaacaaaaagatataaaaagatgtagatctatttttgaaagagcattgaatatt
gattacacaaataaaaatttatggttgaaatatatagaagtcgaattaacaaataagaat
attaatagtgctaggaatttattagaaagagtggttttattattacctttagaaaatata
ttttggaaaaaatatgcacatttagaagagatattaaataattttgttaatgctagaaat
atatatgaacgatgggttaagtggaaaattgatgaaactgcttttttatgttatataaat
tttgaagaacggtgtaaagaaataaataaatgtcgagaaatttttgaacgccttattgtt
agtatacctaaattagaatgcttttatagatttataaaatttgaaaagaaatataaaaat
attagtagagctagagcatgctatgaaaaatgtatagagttattgccatcacaattttta
gatcagcacttttatatacatttttctaaatttgaggaagaaaataatgaatatgaaaga
tgccgaaaaatatatatagaagcactaaaaagattaccacgtgaaaatagtgatatttta
tataaaaattttttacagtttcaaaaaaaatattctgaaaaagaggaattagatcaaaca
ttgttatataatgaaaggataaattttgaagaagcactaaaaaaaactcctaatgattat
gatatttggtttaattatataaaattagaagaacagaatattaacttaataaataaagaa
aaatcgataatacgcataagagagttatacgaaagagctataagtataataccacaaata
tgcactaaaaaatattggaaacgttatatatatttatggattaattattctgtttttgaa
gaattatatgcagataatatagatcgagctcgaaaggtttatagcaatatatttaaaata
cttagcaagcaaaattttacatttaaaaaaatttatatcctttatgcaaattttgaaatc
agacaaatggacattgataaagtacgagctatatttaatcatgctattgaaaatgtaaaa
aatgaaaaaatattccaagagtactgtgatatggaattacgccttggtaacgtcaaagag
tgtagaactatatactccaagtatgtggaagcctttccgtttaactcgaaggcatggatc
gccatgatcaatttcgaactatccttagatgaaattgaacgagctaggcaaatcgctgaa
atagccatacatatagatgacatgaaacttccggaattgatatggaaaacctacatcgac
cttgaaatcaacttgcaagaatacgaaaatgcaagcaaactttacgaaagattgctcaat
attactcagcattacaaggtgtacaaaagctatgcagagtttcagtatgtatacttggac
aatataagcaaatgcagagaaatactggaaaatgggattgaattttgcaaaaaaaatgag
ctaacaaatgaaagatcaatactgttaaattttttgtatgaaattgaaaaggatcatggg
gataatgaaattatagagaaaaccttaaaaaggttaccaaaaaaagtaaagaagaaaaaa
ataattaaaagcaatgacgacgaagtggtagaggaatttatcacttacgttttccccgac
gacaaagcacagtcacagaacatgaagatattacaaaaggccatggagtggaagaagaag
atggaaaaacacgaaaaggagcaaaaaaatgagaaagaatctccccaagaaatataa
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