Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_029360
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Entry
PCC21_029360 CDS
T02320
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc00040
Pentose and glucuronate interconversions
pcc01100
Metabolic pathways
pcc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PCC21_029360
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PCC21_029360
Enzymes [BR:
pcc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PCC21_029360
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Glyco_hydro_43
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-ProteinID:
AFR04339
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Position
complement(3302345..3303913)
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AA seq
522 aa
AA seq
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MFRAVIGTGRLRTCAVAIALSGLVLSGCDNSQQPVAEAAPPDLQVKTAPFGWAAQYQNTD
GKFYATTGGEGAHENSIYVVTSRQELKDALNNIRSPRYIAGDADAELKAKLEPKIIYWQG
TVRGDDLGNGRYADAEYYKTKPNKTTFDFDLYVKAFDQDYMAQLKATADAGGSDAAAASA
ELSLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSEAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNVTFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWVDHCTFTDGEHPD
YQEPVLFGKHIQRHDGLLDIEDGADYLTISYNIFAEHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFQGGGA
DENLIIGAYKGSKFKDNGSWFNGNPASNLNQIALDKCSTLQEAEKAAATNSGKAVPAWAL
ETCTNELEWSPPYAYSAGKSIAAVEKYVLDNAGAGKLDISLP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagagcggttattggaactggtcgtttacgtacctgtgcggtagctattgccctt
tccgggctcgtgctttccgggtgtgataatagtcagcagccagtggcagaagcagctccg
ccagatttgcaggtgaaaacggcaccgtttggctgggctgcgcaatatcagaatacggat
ggtaaattttatgcaacgacggggggcgagggcgcacatgaaaatagtatttatgtcgtc
accagccgccaggaattaaaagacgcattaaataacatccgcagcccccgttatatcgcc
ggtgatgctgatgcggaattgaaggcgaagttagaacccaaaattatctactggcaaggc
acggtccgcggcgatgatttaggcaatggacgctatgcggatgctgagtattataaaacc
aagccgaataaaacgacgtttgattttgacttatacgtcaaagcgttcgaccaggattat
atggcgcagttgaaagcgacggcggatgcgggcggcagcgatgcggcggcggctagcgct
gaacttagcctgcttaaaaagcaaaatggtcaacgctcgcagtatgccaacaaccagaag
gcgcagattcaatttcaggtaccgccgaataccacgattttaggtgtgggtagcgaagcg
aaactggtagagggctatttatccctcaataccttaagtcacacgtttggcaaaaccgat
aacagcaacatcattatccgtaatgttacgtttcaggcaccgcgtgacttcgccccagcc
tgggatgcgggcgacggtgataaaggcaactggaatgcgcgctatgattccgtgtcgatt
aacgccagcaaaaatgtctgggtcgatcactgtacctttacagacggtgaacatcctgac
tatcaggaaccggtgctatttggcaaacatatccaacgccacgacggcttgctggatatc
gaagacggtgccgactacctgacgatttcctacaacatttttgccgagcatgacaaaacg
gtattaattggctccggcgatggtgataaaggggaataccgaatcacttttgaaggcaat
ttatgggacaacagcgtgcagcgttcaccgcgtgtgcgctttggtcaggtgcatttgctg
aataactaccatcgcggggcaacggatacaaattaccccattctgtatgccattgggatg
ggcttcgattcatccattctttccgaaagtaacgtgtttaatttccagggcggcggcgcg
gatgaaaatctgatcatcggtgcctacaaaggaagcaaatttaaagacaacggctcctgg
ttcaatggcaatccggcaagcaatttgaatcaaatcgcattagacaaatgcagcacattg
caagaagccgagaaggctgccgctacgaattctggcaaagcggtacccgcatgggcgctg
gaaacctgcaccaatgaattggaatggagcccgccttatgcgtatagcgccgggaaatcc
attgccgccgttgagaaatacgtcctggacaatgccggagcagggaaactggatatttct
ctgccgtga
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