Pectobacterium carotovorum subsp. carotovorum PCC21: PCC21_038520
Help
Entry
PCC21_038520 CDS
T02320
Name
(GenBank) pectate lyase III
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pcc
Pectobacterium carotovorum subsp. carotovorum PCC21
Pathway
pcc00040
Pentose and glucuronate interconversions
pcc01100
Metabolic pathways
pcc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pcc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PCC21_038520
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PCC21_038520
Enzymes [BR:
pcc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PCC21_038520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
AFR05255
LinkDB
All DBs
Position
4357591..4358715
Genome browser
AA seq
374 aa
AA seq
DB search
MKYLLPSAAAGLLLLAAQPTMAANTGGYATTDGGDVAGAVKKTARSMQDIIDIIEAAKLD
SKGKKVKGGAYPLVITYNGNEDALIKAAENDICGQWKKDARGVEIKEFTKGITIIGTNGS
SANFGIWLTKSSDVVIRNMRFGYMPGGAQDGDAIRIDNTPNVWIDHNEIFAKNFECAGTK
DGDTTFESAIDIKKASTNVTISYNYIHGIKKVGLSGFSSSDTGRDLTYHHNIYDDVNARL
PLQRGGQVHAYNNLYTGITSSGLNVRQKGIALIERNWFENAKNPVTSRYDGSNFGTWELR
NNNVMSPADFAKYNITWDKDSKPYVNAEDWKSTGTFASVPYSYSPVSAQCVKDKLANYAG
VNKNLAVLTAANCN
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacctactgccttctgcagccgctgggctgttattgcttgcggcccaaccaacg
atggcggcaaatacggggggttatgctaccactgacggtggtgacgttgccggtgccgtg
aaaaaaacggcgcgctccatgcaagacatcattgatatcatcgaagccgcgaagctggat
tccaaaggtaagaaagtcaaaggtggcgcttacccgctcgtcatcacctataacggtaat
gaagacgcactgatcaaagccgcagagaacgatatctgcggtcagtggaagaaagacgcc
cgcggtgtagaaatcaaagagttcaccaaagggattaccatcatcggaaccaatggatcg
tccgccaacttcgggatctggctgacgaaatcatccgatgttgtcatccgtaacatgcgt
tttggctacatgccgggcggcgcgcaggatggtgatgctattcgtatcgataacacgccg
aacgtctggattgaccacaacgagatcttcgcgaaaaactttgaatgcgcaggcacaaaa
gacggtgacaccacattcgaatccgcgattgatatcaagaaagcctcaaccaacgtgacc
atttcgtacaactacattcacggcatcaaaaaagttgggctgagcggcttcagcagcagc
gatacgggccgtgacctgacttaccatcacaatatttacgacgacgttaacgctcgcctc
ccgctgcaacgtggcggtcaggttcacgcgtataacaacctgtataccggcatcaccagt
tctggcctgaacgtgcgtcagaaagggattgcgctgatcgaacgtaactggttcgagaat
gcgaaaaacccagtgacctcacgttacgacggttccaacttcggtacctgggagctgcgt
aataacaacgtcatgagcccagccgacttcgcgaaatacaacatcacctgggataaagat
tccaagccctacgtgaatgcggaagactggaaaagcactggcacattcgcttctgttcct
tacagctactctccggtttcggcacagtgcgtgaaggacaaactggcgaactatgctggc
gtgaacaaaaaccttgccgtgctgacagcagcaaattgcaactaa
DBGET
integrated database retrieval system
