Ectopseudomonas chengduensis: QYM18_04250
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Entry
QYM18_04250 CDS
T09586
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pche
Ectopseudomonas chengduensis
Pathway
pche03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pche00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QYM18_04250 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pche03021
]
QYM18_04250 (rpoA)
03400 DNA repair and recombination proteins [BR:
pche03400
]
QYM18_04250 (rpoA)
Enzymes [BR:
pche01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QYM18_04250 (rpoA)
Transcription machinery [BR:
pche03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QYM18_04250 (rpoA)
DNA repair and recombination proteins [BR:
pche03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QYM18_04250 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
WKC38307
LinkDB
All DBs
Position
complement(900985..901986)
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQEVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLAKKGPGVVTAADIQLDHD
VEIVNGDHVIANLASNGALNMKLTVARGRGYEPADARQSDEDESRSIGRLQLDASFSPVR
RVAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgaccccccgtcacatcgatgtgcaggaggtcagt
ccgacccgcgccaagatcactctcgagcctctcgagcgtggctttggccataccctgggc
aacgcgctgcgtcgcatcctgttgtcctccatgcctggctgtgcagtagtcgaggccgag
atcgatggcgtactccatgagtactccgcgatcgaaggtgtgcaggaagatgtcatcgag
atcctgctcaacctgaaaggtctggctatcaagctgcacggccgtgacgaagtgaccctg
actctggctaagaagggcccgggcgtagttaccgctgccgatattcagctggatcacgat
gtcgaaatcgtcaatggcgaccacgtaatcgccaacctggcttccaatggcgcgctgaac
atgaagctcaccgtggctcgtggtcgcggctatgagccggctgacgcgcgtcagagcgac
gaagatgaaagccgcagcattggtcgcttgcagctggatgcttcgttcagccctgtgcgt
cgggttgcttacgtggtggaaaacgcccgtgtcgagcagcgcaccaacctggacaaactg
gttatcgacctggaaaccaacggtaccctggaccctgaagaggctatccgtcgtgccgcg
accatcctgcagcagcagctggccgcgttcgtcgacctcaaaggtgacagtgagccagtg
gtggtcgagcaggaagacgagatcgatccgatcctgctgcgtcctgtcgatgacctggaa
ctgaccgtacgttcggccaactgcctcaaggcagagaacatctactacatcggtgatctg
attcagcgcaccgaagtagagctgctcaaaaccccgaacctgggcaagaaatccctgacc
gaaatcaaggatgttctggcttctcgcggtctgtccctcggtatgcgcctcgacaactgg
ccgccggcaagtctgaagaaagacgataaggccactgcctga
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