Ectopseudomonas chengduensis: QYM18_09605
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Entry
QYM18_09605 CDS
T09586
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pche
Ectopseudomonas chengduensis
Pathway
pche03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pche00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QYM18_09605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pche03019
]
QYM18_09605
03400 DNA repair and recombination proteins [BR:
pche03400
]
QYM18_09605
Enzymes [BR:
pche01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QYM18_09605
Messenger RNA biogenesis [BR:
pche03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QYM18_09605
DNA repair and recombination proteins [BR:
pche03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QYM18_09605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
WKC39325
LinkDB
All DBs
Position
2036886..2038808
Genome browser
AA seq
640 aa
AA seq
DB search
MSTLKRVFGFDKLRPGQEAVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVISP
LLALMQDQLAFLHAHGIAAASIDSAQSREQAAEVMNRARSGELKILMISVERLKNERFRN
FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFGIGQVLLLTATATPKVIADMR
EKFAIAEADVVTTGFYRPNLNLLVEPVPGGAKTQRLQQWLAPRRGQASIVYVTQQKTAEQ
VAERLARDGLAVSAYHAGMAHEARESIQRRFMAGELECIVATIAFGMGIDKRDIRNVVHF
DLPKSVENYSQEIGRAGRDGQASDCLVLASRDGLSVLENFVYGDTPELDGIRAVLDDLRA
VGTGGQWELMLGQLSELSNIRALPLKTLLVQLELRGIIAPRYAYFAEYRFKLLLEDEALL
AQFEGERRQFVEAILASSRRARTWSTLDFDVLYRDHGAERARVVKALDYFQEKGWLELES
KQMTEVYAVLDGGFEVEALANDLHAHFRAHEASEIARIQAMLGLFESRECLSRRLALYFG
DEHAPERCGHCSVCQGRVASLPLPPELPSLNGRDAQALCAAFVEKHLQYAGHAPSHECLT
RFLCGVTTPLLTKLKARQLAGFAALEEYPYAEVREWLTGL
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccctcaaacgcgtcttcggtttcgataagctgcgtcccggtcaggaagcggtg
atcagcgccgtgctcgccggccgttcagcggcggcgatctttcccaccggttcgggcaag
tcgttgtgctaccagttaccggccctgcacctgccgcacctgaccctggtcatctcgccg
ctgctggcgctgatgcaggaccagctggccttcctgcatgcccacggcattgcggcggcg
agcatcgattcggcgcagagccgcgaacaggctgccgaggtgatgaatcgcgcgcgcagc
ggcgagctgaagatcctgatgatctcggtggagcgtctgaagaacgagcgctttcgcaat
tttatcgcccaggtgccgatctcgctgttggtggtcgacgaggcgcactgcatttccgag
tggggccacaacttccgcccggattacctcaagctgcccgactaccagcgtcagttcggc
atcggccaggtgctgctgctgactgccacggcgacgcccaaggtgattgccgacatgcgc
gagaaattcgccatcgccgaggcggacgtggtcaccaccggtttctaccggcccaacctc
aatctgctggtcgagccggtgcccggtggcgccaagacgcagcgcctgcagcaatggctg
gcaccacggcgcggccaggcgagcatcgtttacgtcacccagcagaagaccgccgagcag
gtcgccgagcgcctggcgcgagatggtctggcggtcagcgcctaccacgcgggcatggcg
catgaggcacgcgagtcgatccagcggcgcttcatggccggcgagctggaatgcatcgtc
gccaccatcgccttcggcatgggcatcgacaagcgcgacatccgcaacgtggtgcacttc
gacctgcccaagtcggtggagaactacagccaggaaatcggccgcgccggtcgtgatggt
caggcttcggactgcctggtgctggccagccgcgatgggctcagcgtgctggagaacttc
gtctatggcgatacgccggagctcgacgggattcgtgccgtgctcgacgatctgcgtgcg
gtcggtacgggcgggcaatgggagctgatgctgggccagttgtcggagctgagcaatatc
cgtgcgctgccgctcaagaccctgctggtgcagctggagctgcgcggcatcatcgcgccg
cgctatgcctatttcgccgagtaccgcttcaagctgctgctggaagacgaagccctgctg
gcacagttcgagggcgagcggcgccagttcgtcgaggccattctggccagttcgcgccgc
gcccgcacctggagcaccctggatttcgacgtgctgtatcgcgaccatggcgccgagcgc
gcgcgggtggttaaggcactggactacttccaggaaaagggctggctggagctggaaagc
aagcagatgaccgaggtctacgccgtactcgatggcggtttcgaggtcgaagccctggcc
aatgatctgcacgcgcatttccgtgcccacgaggccagcgaaatcgcccgtatccaggcc
atgctcggtttgttcgagagccgcgaatgcctgagccggcgcctggcgctgtacttcggc
gacgagcacgcgcccgagcgctgcgggcattgttctgtgtgtcagggccgcgtcgccagc
ctgccgctgccgccggagctgccgtcattgaatggtcgcgatgcccaggcgctgtgcgcc
gccttcgtcgagaaacacctgcagtacgctggacacgcgccgagccacgagtgcctgacg
cgctttctctgcggcgtgaccacgcccttgttgaccaagctcaaagcgcgtcagttggct
ggcttcgctgcgttggaagagtacccctacgccgaggtgcgtgagtggttgacgggcctg
tag
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