Pochonia chlamydosporia: VFPPC_05546
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Entry
VFPPC_05546 CDS
T09407
Name
(RefSeq) pre-mRNA splicing factor CLF1
KO
K12869
crooked neck
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VFPPC_05546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchm03041
]
VFPPC_05546
03036 Chromosome and associated proteins [BR:
pchm03036
]
VFPPC_05546
Spliceosome [BR:
pchm03041
]
Complex B
Other components
Prp19-related factors
VFPPC_05546
Complex C
VFPPC_05546
Chromosome and associated proteins [BR:
pchm03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
VFPPC_05546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
Suf
TPR_19
HAT
TPR_16
TPR_CcmH_CycH
TPR_15
U3_assoc_6
TPR_2
Motif
Other DBs
NCBI-GeneID:
28848716
NCBI-ProteinID:
XP_018141550
UniProt:
A0A179FFD0
LinkDB
All DBs
Position
5:complement(810287..812314)
Genome browser
AA seq
675 aa
AA seq
DB search
MESSRGPPRVKNKAAAPVQISAEQLLREAVDRQEVGIETPTQKFTDLEELHEYQGRKRKG
FEDYVRRNRINLKNWTQYAQWELEQKEFARARSVFERALDVLPHNVVLWIRYIEAEMKSR
NINHARNLLDRAVTILPRVDKLWYKYVYMEEMLGNIPGTRQVFDRWMQWQPDEAAWSAYI
KLEKRYGEFERARAIFESFTVVHPEPRNWIKWAKFEEEYGTSELVREVFGNAVESLGDEF
VDERLFIAYARFESKLNEYERARAIYKYALDRLPRSKSVLLHKAYTTFEKQFGDKDGVED
VVLSKRRVYYEEQVKENPKNYDAWFDYAGLEESSRDVDRIRDVYERAVAQLPPTQEKRHW
RRYIYLWIFYAIWEELEGQDIERARQIYSTCLNLIPHKKFTFAKIWLLAAQFEVRHGQLT
AARKLLGRAIGTCPKDKIFNGYIDLERKLFEFVRCRTLYEKHIEYNPANCQTWIKFAELE
RGLDDLDRTRAIFELAVNQQQLDMPELLWKAYIDFEEEEGEYERTRELYERLLEKTDHVK
VWISYAHFEINIPEEEEDEENAEDQPLSEEAKARARKVFERAHKSMRDKDLKEERVSLLN
AWLSFEREHGSEEDIDNVQRQMPRRTKKRRLLEDDTYEEYFDYVFPADDQQAKNLSNILA
MAQKWKQTGGELSGA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgtcaaggggccctccgagggtcaagaacaaggccgctgcgcccgttcaaatc
agtgcagaacaactgcttcgcgaagctgtcgaccgtcaagaagtcggcatcgagactccg
acacaaaagtttaccgatctcgaggagcttcacgaataccagggaagaaagcgcaagggc
tttgaggattacgtccgtcggaatcgcatcaatttgaagaactggacgcagtatgcgcaa
tgggagctggaacaaaaggagtttgcgcgcgcgagatccgtcttcgagcgagccctcgat
gtcctgcctcacaatgtcgtcctatggattcggtacattgaggcggagatgaagtcgaga
aatatcaatcacgcgcgaaacttgctggaccgtgccgtcaccattcttcctcgagtcgat
aagctgtggtacaagtatgtgtacatggaggagatgctgggcaacatccccggcaccaga
caagtattcgaccgatggatgcaatggcagcccgacgaagcggcctggagcgcctacatc
aagttggagaagcggtacggtgaatttgagcgagcgcgagccattttcgaaagctttacc
gtggttcatcccgagccgcgcaactggatcaaatgggccaaattcgaggaagagtacgga
acaagcgagctggtccgagaggtttttggaaacgctgtagagtcactgggcgacgagttc
gtcgatgaaaggctgttcattgcgtacgcccgattcgaatccaaactcaatgagtatgag
cgtgcccgtgccatttacaaatacgcactggataggctcccgcggtcaaaatcagtgcta
ctacataaagcctacaccacatttgagaagcaattcggcgacaaggacggagtcgaagac
gtggtgctgtcaaagcgaagagtctactacgaggaacaagtcaaggagaatcccaaaaat
tacgacgcatggttcgactacgccgggctggaggaatcatcccgagatgtagatcggatc
cgagacgtctacgaaagagcagtcgctcaactaccacccacgcaggagaagcgccactgg
cgccgctacatctacctctggatattctacgccatctgggaggaattagaaggccaggat
atcgagcgagcgcgacaaatatacagcacatgcctcaacctcatcccccacaagaaattc
acctttgccaaaatctggctcctcgcagcccaattcgaagtgcgccacggccaactcacc
gcagcgcgcaagctccttggccgcgccatcggcacgtgtcccaaggacaaaatcttcaac
ggctacatcgacctcgagcgcaagctattcgagttcgtgcgctgccgcaccctatacgag
aaacacatcgaatacaatccagccaactgccaaacgtggataaaattcgcagagctagag
cgcggcctggacgacctcgaccgcacgcgggccatcttcgaactcgccgtcaaccagcaa
cagcttgacatgcccgaactcctctggaaagcatacattgactttgaagaagaagagggc
gagtacgagcgcacccgcgagctctacgaacgtctcctcgagaagacggaccatgtcaaa
gtctggatcagctacgcccactttgagatcaacatccccgaggaggaagaggatgaagag
aacgccgaggaccagccgctcagtgaggaggcgaaggcccgtgcgcgaaaggtctttgaa
cgcgcgcacaagagcatgcgcgacaaggacctcaaggaggagcgggtgtcgctgcttaat
gcgtggttgtcgtttgagcgggagcacgggtcggaggaagacattgacaatgtgcagagg
cagatgccgaggaggaccaagaagcgcaggttgttggaggatgatacgtacgaggagtac
tttgattatgtgttccctgcggatgatcagcaggcgaagaatttgtctaatattctggct
atggcacagaagtggaagcagacggggggtgagttgtcaggcgcctaa
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