Penaeus chinensis (fleshy prawn): 125031716
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Entry
125031716 CDS
T08118
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125031716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125031716
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125031716
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125031716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
PRC2_EED_ins
Motif
Other DBs
NCBI-GeneID:
125031716
NCBI-ProteinID:
XP_047478585
LinkDB
All DBs
Position
13:6568732..6605669
Genome browser
AA seq
2546 aa
AA seq
DB search
MNLDSLTNALSHIGHSVASLTKKNLNSSKEEIQKVVCQFGGEAERHLYRVLIGHLEWSGP
SGGESHRPSPNNNNNNNNNNNNKEKESAPSSSGATLSWSAAGSAGCALLVQHLSATLPPT
HFIASLAFAVANPPNPSKYIKSQWVAGVCKVLRLTRVQEIKLCLHLLQGTSLEIRNQATT
VLKAKLPELVRAYVDTDSEDKELLELSTESLHLLLIHIVHLWRDPPAALLPQESRQAFIS
ALQQEFPRSRVPVVLAPLLYPDTDILMEKITQEQPANMAKNLQLDGSLADLVRELGYSFC
STVEECRSNLGNFCVTSITPAAVAKVLGVMVRTHTGLPSEQIGLQNLNSPNSLWSDTKDK
SSNNQTTSSGSDVTLGGSGSLTGPHCWNVEVFIKALLEVVPNINVKEVFNKLDHKGFLVK
DRQGLKLLITALGCLLQGQSLRLDLFPVECFYQQWKNTEEQLSLITQILRNPEIFCFTDL
PCHLVSTDSLKTLPELDNKEVATWKSVQLLDTLLCLGENHYTAVKELFKFPIQHCPDILV
LGLIQATLPYTILRQDLIASLIPIFLGNHPNAAIILHHAWHTQNNTTTVRQIIMHAMAEW
YMMVENDQTRLSRILDVAQDLKALSLLLNAQPFPFVIDLACLAYRREFLKLDKWLTDKIR
EHGEAFISACVKFLQRRCPHLVGGKEDGMQKSSQLPPETMATILVCLNACALNVSQELSD
TIVTMVQHCNLMNRPRTQQGVIGFPGPSQQQTSEGSLGGIASSLSSLNLGGAGGTSSIFP
TSASSSMSLGSLGSLGTAPGSPGRPLGPSTAPGTSQSPLSSILPALQLGPPHAAAVGSQL
PTLPTSSIIPSSLRSHSVQPTVNPPSRQMDMSQIFDMPQMVSKEVEDEANSYFQRIYNHP
PHPTLSIEEVLDMLKKFHESTNKREREVYSCMLRNLFEEYRFFPTYPDKELFTTARLFGG
IIEQGLVEYMALGVALRYVMEALQKPHGSKMYYFGIVALDRFRSRLKEYPRYCQHLMAIQ
HFNEFPPHLIEYIKYGTQSQEPPSRPSGVVLPPSMNVSPSTPAPGTSAVAVTGTVVQPPP
AAVSAVVSSVAKTLTVTTTTTTTTAITRPQSMSVPSAPVGSGKQPTITTTNIETLLVATE
KEEKITPPPEHMQDKIAFIFNNLSQVNLPQKCEELREVVSEEYWIWVAQYLVMKRASIEN
NFHTLYSLFLDQLKMNNFNAMVCRETLRNIKVLLRADKSSANFSDKSLLKNLGHWLGMLT
LAKNKPILHSDIDMKSLLVESYNKGLQEMQYVIPFVAKVMESCAKSRVFKPPNPWTIAIM
NVLAELHKEPDMKLHLKFEIEVLCNRLEINLEDLKPANILNDRERIARLKPQLSQLVGSK
RAESTPLFPALQAFSSSTSFMHPMNTGSRWVANPNINHAPGHEVINQAKTSWSQMGPTGQ
VEMPTSTVTVQSSSVGATPTPPSVLPPHPSSTPTPIQPQQPSVNEPRFIYSDITVTSLRG
LEPHISVSVPQVGGIATNAQLKQLVRHAVEMAVQEIVTAVLERSIKIAITTAEHIIKKDF
ALDPDESRMRVATHHMVRNLTAAMAMITCRDYLATNIAKSIKQGLMQAFSRTNQQQLPQQ
LEQMEQLAAAIAQENVGIACAFIQKTAAEKAVIEMDKRLAQEYEVRKAARTEGRRYCDAV
ALTYQAERMPEPIRLKVGGVTQPQMAVYEEFARNIPGFLPITDQDTMFLTKPVPISSQQQ
QQQPPHSQQQAFGSDETTAFLLLTERISAELEHTIQAFTTLAPSSSLIPMLHSLREGLLL
TRTNRDAHTAQLLLRKAVENLLEGARELPTEPELSQLALRFRDCHLIVLKAMADHRSYGT
NWTSKNVTKCWAESREELKYNLDVVDWLIRSNLLNMQLLDEHLARTLDDPRLPSYIPSFF
IMQLVQIYLVDDPSNSFLSESDLQLTLEALVRMCHSRQAPEGLVPLIDALRLKHDLLASE
RLAGGSSLSGTNSALTAGPSLHFHSGVTQARDFSDPPALQEKTEVLLREWIQMYHSPTAG
QGSASAFQHFVKQMNLHGILKTDDLITRFFRICISMCRDLCVRSILEQGQGPSPTYVRSK
CFQNLDAFVRLIALLVKHSGEASNPTTKINLLNKVLGLVCGIMIHDIESNGTEFQQLPYH
RILIMLFLELNAPEAILESINLPVCEVLMAFTQTLHLLRPSKCPGFAYAWLEIVSHRVFI
GRMLAITPQQKGWSMYSMLLADLFKFLAPFLRNAELAKPLTMLYKGTLRVLLVLLHDFPE
FLCEYHYGFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLPEITVSPKIPTNV
ASLIQPPELKKNLDSYLKNRTPVTFLSDMRTFLQVNNEPGMRYNMSVMNALVLYVGMQAI
AQIHSKGLTPSMSTIAHSAHMDIFQNLGVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCT
LLHLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPSFKFWSHEFVKCAP
EIEKLFESVARSCMVQKVAPRGDSEA
NT seq
7641 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactcgctaactaatgctttgtctcatattggtcactcggtcgccagtttg
acaaagaaaaacctgaactctagtaaggaagagattcagaaagtggtgtgtcagttcggt
ggagaggcagagcgacacttgtaccgggtgttgattggtcacttggagtggtctgggccg
tcaggcggagaatctcaccggccttcacctaacaacaacaacaacaacaacaacaacaac
aataacaaagagaaggagagcgcccccagctcaagcggagccaccctctcgtggtcggca
gcgggcagtgcaggctgtgcactccttgtgcagcatttgtctgccacacttcccccaaca
catttcattgccagccttgcttttgcagttgcaaacccccccaacccaagcaagtatata
aaaagccagtgggttgctggtgtgtgcaaagtactcaggcttaccagggtacaagaaatc
aaactctgtttacatcttctacaaggaacaagtcttgaaatacgtaaccaggccacaact
gtactgaaagctaagctcccggaactcgttcgggcatacgttgatacagattcagaagac
aaggaactcttggaattatccactgaatctctgcacttgttgctaatccacatcgtccac
ctgtggcgagaccccccagcagctcttctacctcaggagtcaagacaagcatttatctcg
gcactccagcaggagtttcctcgatctcgtgtgcctgtcgttcttgctcccctcctttat
ccagatacagatatactaatggagaagatcacgcaagagcagccagccaacatggccaaa
aatctacagctggacgggtctctggcagacttagtccgtgagttaggctacagcttctgt
agcacagtggaagaatgcagaagcaacctcgggaacttctgtgtgacctccataacacca
gcagctgttgcaaaggtccttggtgttatggtgcgcactcacacaggccttccatcagaa
cagattggtcttcagaacctcaattccccaaactcgctatggagtgatacgaaagacaag
agctcaaataaccaaacgaccagctcgggtagcgatgtaaccctaggtgggtcaggaagc
ctcacgggtcctcactgctggaatgtggaagtgttcatcaaggcgctcctagaggtggtc
cccaatatcaatgtgaaggaggtcttcaacaagttggaccacaagggcttcctagtcaaa
gacagacagggtctcaaattgcttatcacagcgcttgggtgccttctccagggccagagc
ttgcggcttgatttgtttcctgtggaatgcttctaccagcagtggaagaacaccgaggaa
cagcttagtcttatcacacagatcctcagaaatccggagatattttgtttcaccgatctt
ccttgccatttagtgtccactgatagcttgaagacattgccagagcttgataataaggag
gtggccacatggaagtcagtacaactactagatactctcctttgcctcggggagaatcac
tacacagctgtgaaggagctcttcaagtttcccatccagcactgtccagatatccttgtt
cttggtttaatacaggcaactttaccctacactattctgcggcaagatctgattgcttct
ctcattccaatatttttggggaaccacccaaatgcagcaataatccttcatcatgcttgg
cacacacagaacaatacaactacagtccgccagattatcatgcatgcaatggcagagtgg
tatatgatggtggagaatgaccagacaagactaagccgaattcttgacgtcgcccaagat
ctgaaagccctctcattactcctcaatgctcagcctttcccatttgtgatagatttggct
tgtttggcctacagacgagagtttttgaagctggataagtggctgacagacaagatccgt
gagcatggagaggcattcatctcggcatgcgtcaagttcctgcagcgccggtgtcctcat
ctggtgggtggcaaggaggatgggatgcagaaatcttcgcaacttcctcctgaaaccatg
gccaccattcttgtgtgtcttaatgcttgtgctttaaatgtgtctcaagaattgtcagac
accattgtgacaatggttcaacactgcaacctgatgaacagacctcgaacacagcaagga
gtgattggcttccctggtccatctcagcagcagacaagtgaaggcagcttgggtggcatc
gcctctagcctgagcagcctgaacctgggtggagcaggtggcacatcctccatcttcccg
acctctgcctcatcatccatgagtctgggtagcttggggtcgctgggcacagcaccagga
tcccctgggcgtcccctagggccttctactgcccctgggacatcgcagtctcccctctcc
tctatcctgcctgctttacagctgggccccccacatgcagcagctgtgggctctcagctg
cccaccttgcccacctcctctatcatcccgtcatctctgaggtcccattccgtgcagccc
accgtcaacccccccagcaggcaaatggatatgtcccaaatcttcgacatgcctcaaatg
gtgagcaaagaggttgaagatgaagccaatagttacttccagcgtatctacaatcatcca
ccccatcctaccctctccattgaggaggtattggacatgctgaagaaattccatgaatcg
accaacaagagggaaagggaggtctattcgtgtatgctccgaaatctcttcgaagagtat
cgcttcttccccacctacccagacaaagaactcttcaccactgccagactgtttggtggc
atcattgaacagggtctagtcgaatatatggccttaggtgtagcactcaggtatgtcatg
gaagctctccagaaaccacatggaagcaagatgtactactttggcattgtggcactggac
aggtttcgcagtcgtttgaaggaataccctcgctattgtcagcaccttatggctatacag
catttcaatgaatttcccccacaccttatagagtacatcaagtacggaacacagtcgcaa
gaacccccctcacgcccatctggtgttgtgctccctccttccatgaatgtgtcaccaagc
accccggccccaggcacctcagcagtcgccgtcacgggtactgtcgttcagccaccccct
gctgcggtgtcagctgtggtgtcatccgttgccaagaccctcactgtcaccaccaccaca
acaactaccaccgccatcaccagacctcagtcaatgtctgttccgtctgcaccagtggga
tctgggaagcaaccaacaatcacaacaaccaacattgaaacactgttagttgccacagaa
aaagaagaaaagattactcctccacctgagcatatgcaagataaaattgccttcattttc
aacaatctttctcaagtaaaccttcctcaaaagtgtgaagagctgcgtgaagtggtcagc
gaggagtattggatttgggtcgcccagtacttggtgatgaagcgagcctccattgaaaat
aacttccacactctttattccttgtttcttgatcagctaaagatgaacaatttcaatgct
atggtttgcagggaaactttaaggaatattaaggtactcctaagggctgataagtcttcg
gccaacttttctgacaagtcactattgaagaaccttggacattggctgggcatgttgacc
ctggccaagaataaacctatccttcactcggacatcgatatgaagtctttgcttgttgag
tcttacaacaaaggcttgcaggaaatgcaatacgtgattccattcgtagccaaggtaatg
gagtcatgtgcaaaaagtcgtgtatttaaacctcctaacccttggacaatcgccataatg
aatgtgctggcagagctccacaaggaacctgacatgaagctccatctcaaatttgaaatt
gaagttctgtgtaatagattggaaattaatttggaggatctgaagccagcaaacatcctg
aatgaccgggaacgaattgcacgcctgaaaccccagctgtcgcagctggtaggatcgaaa
agggctgaatcgactccactcttcccagctctgcaagcattctcttcatcgaccagtttc
atgcacccgatgaatactggcagccgatgggtagccaatccgaatataaaccacgcaccg
ggacatgaagtcatcaatcaagcaaagacaagttggtcacaaatgggtccaacagggcag
gtggagatgcccaccagcacagtcaccgtacagagctcatctgtgggcgccacgccaacc
cctccatcagtgctgccacctcatccctcctctaccccaacacctatccagcctcaacaa
ccttcggtcaatgagccacggtttatctactctgatatcaccgtcacatcccttcgggga
cttgagcctcacatatctgtctcagtacctcaggttggtggcattgcaaccaatgctcaa
ttgaaacagcttgtgcgacatgctgtagaaatggcagtccaggagattgtgacagcagta
ttggagcgcagcatcaagattgctatcaccacagcggagcacataatcaagaaagacttt
gctctggacccggatgagtctcggatgcgagttgcaactcatcacatggttcgcaacttg
acagcagcaatggcaatgataacatgcagagattatctggctacaaatattgccaagagc
atcaagcagggattgatgcaggctttttcacgaacaaatcagcagcagctgccacaacag
ctagagcagatggagcagctggctgcagccattgctcaagagaatgttggtatagcttgt
gcctttattcagaaaactgctgcagagaaggctgtgattgagatggataagaggctggcc
caggaatatgaagtgaggaaagcggcaaggacagaaggccgccgctattgcgatgcagtg
gctttgacataccaggcggagcggatgccagaacccatccgcctgaaagtgggtggcgtc
acccaacctcagatggctgtgtatgaagagtttgcccgcaacatccctggcttccttccc
attactgatcaggataccatgttcttgaccaagcctgttcctattagctcgcaacaacag
cagcagcaaccccctcactcacaacagcaggcctttggaagtgatgagacaactgcattc
ctgcttctgacggagcgcatcagtgctgagctggaacacaccatccaggccttcactacc
ctggccccatcatcctccctcatcccgatgctgcactcgctcagggaagggcttctgctc
acccgtaccaaccgagatgcgcacactgctcagctgctgctcaggaaggctgtggagaac
ctcctggagggcgcacgagagctgcccactgaaccagaactgagccagcttgcccttcgg
ttccgtgactgccacctgattgttttgaaggccatggctgatcatcgttcctatggaacc
aactggacatcgaagaatgttaccaaatgctgggctgaatcgcgcgaagaattgaagtac
aacttggatgttgtcgactggctgatccgttccaatttgctgaacatgcagttgctggac
gaacaccttgctagaactctagatgatccaaggcttccatcctacatcccttcatttttc
atcatgcagcttgttcagatttaccttgttgacgaccccagcaacagcttcctgagtgaa
tcagacttgcagctaacactggaagccctagttcgcatgtgccactcccggcaggccccg
gaaggccttgtgcccctcattgatgcactgcggctgaagcatgatttactggcgagcgag
cggcttgcagggggcagcagcctcagcggcacaaatagtgccctgactgctgggccaagt
ctccacttccattcgggtgtgacgcaggcaagggacttcagtgatcccccagccttgcag
gagaagaccgaggtgttgctgcgggagtggattcagatgtaccattccccaacagctggc
caggggtcggcctctgccttccagcacttcgtgaagcagatgaatcttcacggaatcctc
aaaactgatgatctcataaccaggttctttaggatctgcataagcatgtgtcgagacctt
tgtgtccgatcgattcttgagcaaggccaaggcccttctcctacctacgttcgcagcaaa
tgcttccagaatctggacgcctttgtacgtcttattgccttattagtcaaacactcgggg
gaggcatcaaacccaaccacaaagatcaatcttctgaataaggtcttaggacttgtgtgt
ggcatcatgatccatgacattgagtcaaacggcactgagttccagcagcttccatatcac
cgcattctcatcatgcttttccttgagctcaacgcccctgaagcgatcctagagtccatc
aaccttccggtatgtgaagttctgatggccttcacccaaacgctgcatctgcttcgcccg
agcaagtgcccagggtttgcctatgcctggctggaaattgtgagtcaccgtgtcttcatt
ggccgcatgctggccatcaccccccagcagaagggttggtccatgtactccatgctgttg
gctgatctcttcaaattcctggcacctttcctgcggaatgcagaactcgccaagcctctg
acaatgctctataagggtacactacgtgtgctactagtcctgctccacgattttccggag
ttcttatgtgaataccactatggtttctgtgatgtcatccctccaaactgcatccaaatg
cgcaatctcatcctctcggctttccctcggaacatgaggctccccgaccccttcaccccc
aatctgaaagtggacatgttgcccgagatcactgtctctcccaagatccccaccaatgtt
gctagcctcatccagcccccagaactaaagaagaacttggactcctacttgaagaacagg
acgcctgtcaccttcctctcagacatgcggactttcttgcaggtcaacaatgaaccaggg
atgcgctacaacatgtctgtgatgaacgctttggtgctgtatgttggcatgcaggctatt
gctcagatccatagcaaaggcctaactccatccatgtctaccattgctcattccgcccac
atggacatattccagaatcttggtgttgatttagacacagaaggtcgctacttgttcctg
aatgccattgccaaccagctgcggtaccccaacagccacacccactacttcagttgcaca
cttctccatctttttgctgaagctaacactgaagccatccaagagcagatcacgagggta
ctgctggagcgactaatcgtcaatcgtccacacccatgggggcttctcatcaccttcatc
gagctcatcaagaacccatccttcaagttctggagccacgagtttgtgaagtgtgctccg
gagatcgagaagctttttgagtcagtggcacgctcctgcatggtgcagaaagtcgcacca
agaggggattcggaggcctga
DBGET
integrated database retrieval system
