Prosopis cineraria: 129291440
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Entry
129291440 CDS
T09047
Name
(RefSeq) uncharacterized protein LOC129291440 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129291440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129291440
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129291440
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129291440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
129291440
NCBI-ProteinID:
XP_054784759
LinkDB
All DBs
Position
Unknown
AA seq
2392 aa
AA seq
DB search
MTKFSSLVSNHIRFLLQSLDEVNFDSVFHELCQIIEYGTDGSILLLKTCLDHLNYVRNDL
KDMPQVSILAAVIKYLLDKPNFSTVFSESLKTIEISESFLEKFSSGLQLSLLEKITIGLA
LSDSENVDTRLCGKNFCVAQIEELCANPTSLSCSEQIQNIVMFLNRTEGLSKHVDSFMQM
LSLVQLEETPSFVLTPLLPDGLHDPNFLRNMELFHKAEDNDFEAILADIQKEMNMGDIVK
ELGYGCTVSNPLCREIFSLFLPLTEDTLAKLLGSIAWSHAGMDDNQSSFLNFRMALGYST
LSELPPLNSWNIDVLIDTIKHLAPGINWTSIIENLDHEGFFVPSEEAFSFLMSVYKHACK
EPFPLNAICGSVWKNTEGQLSFLKFAVSAPPEVFTFAHSTRQLEYVDAIHGHKLQSGHAN
HAWLCLDLLDVFCQLAERGHASSVRSILDYPLKHCPEILLLGLAHINTAYNLLQHEVSLI
VFPIMLRNVVGGGMILHLWDVNHNLVLRAIIDSQNKDVESTTRIADICQELKILQSILEI
IPAFSSIRLAALASRKEFLDLEKWLVTNLTIHKDVFFEECLKFLKDTHFGGSQNLSSNSF
RQSTVLNLYAEATPTFLKVLKSNSGLISSSQLSEELERLHASIMDSNPRLQSSGAADSSS
DGYSDDIETEANAYFHQMFSSQLTIDVMVQMLSRFKESSVKREQSIFECMIANLFEEYRF
FPKYPERQLKIAAVLFGSLIKHQLVTHLSLGIALRCVLDALRKPADSKMFIFGSMALEQF
VDRLIEWPQYCNHILQISHLRNTHAEIVAFIEQALARISSGHADTEGINHHSAINNHNSM
PTTSGHAEQFNISSVIQPGLQQLQQRREVALDDRNRVSAVSSNDVKPLLSSVGQSSVVTS
GDTSGTIKIHSTVSTPSILSSTPGFVRPSRGATSTRFGSALNIETLVAAAEKRETPIEAP
GSEVQDKISFIINNISAANVEAKAKEFTEVLKEQYYPWFAQYMVMKRASIEPNFHDLYLK
FLDKINSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNHVLR
AREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEIYSMP
NLKMNLKFDIEVLLKNLGVDMKDITPTSLLKDRKREVDGNPDFSNKDVGASQAQIMTDLK
TGLVAPVNQVELPLEVTNPSNAGGHTHLLSQYAAPLHLSTGSLMEEEKVAALGLSDQLPV
AQGLSSSSMPFSISQVPSAIPNIGTHVIINQKLSGLGLQMHFQRVVPIAMDRAIKEIVSG
IVQRSVSIATQTTKELVLKDYAMESDETRIVNAAHLMVASLAGSLAHVTCKEPLRASISS
QLRTSLQGLNIANEILEQAVQLVTNDNLDLGCAVIEQAATEKAISTIDAEIGQQLSLRRK
PREGMGPTFFDANLYTQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSTQSSHS
MAAGVGVQSGSAGLTGTYGPGSGQVNPGYSVGPGSTGYEAVSRLSDDVTESNLASQFSAP
STHHRAADGVPQHSVENDSVSAPFPSAASTPELHDSSDVVKESGASSQPQASSVVERLGS
SVSEPSLTTRDALDKYQAVAQKLEALICNDSGEAEIQGVISEVPEIILRCVSRDEAALAV
AQKVFKGLYDNASNNIHVGAHLAILTAIRDVCKLAVKELTSWVIYSEEERKFNKDITLGL
IRSELLNLAEYNVHMAKLVDGGRNKAAMEFSISLLQTLVIEEPKVISEFHNLVDCLAKLS
IKPGSPESLQQLVETIRNPAAHAASLSAIGTGKEDKNKQSRDKKSPGPLAGREEFNSVES
VEPDPSGLREFSEQVSRLFAEWYRICDLPGANDAAAAHFIVQLHQNGLLKGDDITDRFFR
LLMELAVAYCLSPQQMHTMSFLAIDIFAKLVYTILKGSSKALLSKILAVTVRFIRKDAEE
KKASFNPRPFFRLFINWLHDLGSLEPVTDGANLQILTAFANAFHALQPLNVPGFSFVWLE
LISHRSFLPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGVPVHFLYKGTLRVLLV
LLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITLS
PRIFSEVDAALKAKQMKADVDEYLKTKPQGSQFSSELKQKLLLSPNEAASAGTRYNVPLI
NSLVLYVGMQAIQQLQGRTPHAQSAAGAFPLSVFSVDAALEIFKALIADLDTEGRYLFLN
AIANQLRYPNTHTHYFSFILLYLFAESNQEIIQEQITRVLLERLIVNRPHPWGLLITFIE
LIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDDGIVSGWVSDSSH
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagttttcctctctagtatcgaatcatattcgattcctgcttcagagcttggac
gaggtcaacttcgactctgttttccatgaactttgccagatcattgaatatggaaccgat
ggaagcattttactcctaaaaacatgcttggatcacctgaattatgtcagaaatgatctg
aaggacatgcctcaggtttctattcttgcggcagtcatcaagtacctcttggacaaacct
aactttagtacagtgttttctgagtcactgaagactatagagatcagtgaaagcttccta
gaaaagttttctagtggattgcagttgtctttattggagaaaataaccatcggtcttgct
ttatctgattcagaaaatgttgacaccaggctttgtggcaagaacttttgtgtggctcag
attgaagagctttgtgccaatcctacctctttgagttgttctgagcaaattcaaaatatt
gtcatgttcctcaatcgcactgagggcctttccaagcatgtggattcctttatgcagatg
ttatcattagtccagttagaagaaacaccatcttttgttttgacgccattgctgcctgat
gggttgcatgaccccaacttcttaaggaatatggagctgttccacaaggctgaagacaat
gactttgaagctattttagcagacatacagaaggaaatgaacatgggagatattgtgaag
gaactgggatatgggtgcactgttagcaatccactgtgcagggaaattttctcacttttc
ttacctttaactgaggatacccttgccaaattacttggttctattgcttggtctcatgct
gggatggatgacaatcagagttcattcttaaattttcgtatggcccttggttatagcact
ttgtctgagttgccacccctgaattcttggaatattgatgttctgatagatacgatcaag
catctggcacctggaatcaattggacaagtataattgagaatcttgatcatgaagggttc
tttgttcctagtgaagaagctttttcctttctcatgtctgtatataagcatgcctgcaag
gagccttttcctcttaatgccatttgtgggtctgtctggaagaatactgagggccagcta
tcttttcttaaatttgctgtgtcagcaccaccagaagtgtttacctttgcccactctacc
aggcagttggagtatgttgatgcaattcatggccacaagcttcaatctggacatgcaaat
catgcgtggttgtgtctggacttgttggatgtgttctgccagctagctgaaaggggtcat
gctagttctgttagatcgatccttgattatcctcttaagcactgtcctgaaatcttgctt
cttgggttggcacatattaatactgcatacaaccttctacaacatgaggtttctctgatt
gttttccccattatgttaagaaatgtggttggtggtggtatgattctgcatctttgggat
gttaaccacaatctggtgttgcgggctatcatagattcgcaaaacaaagatgtagagagc
actacaagaattgcggacatctgtcaagagctgaagattctacaatcaatattagagatc
atccctgctttttcgagtataaggttggcagccctcgcctcaagaaaagaatttcttgat
cttgagaagtggttggttaccaatcttacgattcacaaagatgtcttttttgaggagtgt
ctcaagttcctaaaagatacacattttgggggatctcagaacttgtctagcaattctttt
cgtcagtctactgttctgaatctttatgctgaggcgacacctactttcttgaaggttctt
aaaagtaattctggcttgatctcctctagccagctttctgaggagctggaaaggttgcat
gcatctattatggactcaaatccaaggttgcaaagcagtggggctgctgattcatcttct
gatggatattcagatgacattgagacagaagcgaatgcatactttcatcagatgttttct
agtcagttaaccattgatgtaatggttcagatgctttctcgattcaaagaatcttctgtg
aagagggagcaatcaatttttgagtgtatgatagcaaatttatttgaggagtataggttt
ttcccaaagtatcctgagaggcaactcaaaattgcagcggttctctttggttctctgatc
aagcatcagcttgtaactcatctcagtcttgggattgctcttcgttgtgttcttgatgca
ttgcgtaaacctgctgattcaaagatgtttatatttggaagtatggcattggagcagttt
gttgatcgtctgattgagtggccacagtactgcaatcatattcttcaaatctctcattta
cgcaatacgcatgcagaaatagttgctttcattgagcaggctcttgccagaatttcatct
ggtcatgcagacacagaggggatcaaccatcattctgccattaataatcataattctatg
ccaactacctcagggcatgcggagcagtttaatatatctagtgtgatacaacctggatta
caacagcttcaacaaagacgtgaagttgctttagatgatcgtaatagagtctctgctgtt
tcatcaaatgatgttaaacctctcttatcttctgttgggcaatcttcagttgttacttct
ggtgatacttctggaactattaagatacatagcacggtcagcaccccatcgatactatct
tcaactcctggttttgttcgcccttcacgtggagctacatctaccaggtttggttctgct
ttgaacattgaaacacttgtggctgctgctgagaaaagagaaactcctattgaggctcca
ggatcagaggttcaggacaaaatatcattcataatcaacaatatttctgctgctaatgtt
gaagccaaagcaaaagaatttactgaagttttgaaagagcagtactatccctggtttgcc
caatacatggttatgaaaagagcaagcattgagcccaatttccatgacttatacctgaaa
ttccttgacaaaatcaattcaaaggctttgaataaagaaattgtccaagcaacttacgag
aattgcaaggttctgttaggatctgaacttataaagtcaagttcagaagaacgctctttg
ctgaaaaatctgggtagctggctaggaaagctaacaattggaaggaatcatgttttaagg
gcccgtgaaatagacccgaagtctttgattatagaggcttatgagaagggactgatgatt
gcagtaattccatttacttcaaagatcctggagccatgccaaagcagtcttgcatatcaa
cctcctaatccttggaccatgggaattctgggattgcttgctgagatatattcaatgcca
aacttaaaaatgaacctcaagtttgacattgaggttttattaaaaaatcttggtgtagat
atgaaagatatcacaccaacttcactcctgaaggatcgtaaaagagaagttgatggaaat
cctgatttctccaataaagatgtgggagcatcacaagcacaaataatgactgatcttaaa
acaggccttgtagccccagtaaatcaagttgaactgccacttgaagtcaccaacccatct
aatgctgggggacatacccatttgttgtcacagtatgctgcgcctcttcatctctctact
gggtcattaatggaagaagagaaggtagcagctttgggcttgtctgatcaacttcctgtt
gctcaaggactctcttcatcctcgatgcctttctctataagccaggttccgtcagcaata
cctaatattgggacccatgttattatcaatcagaagctcagtggtttgggtttgcaaatg
cattttcagagagtggttccaattgcaatggatagagctatcaaggaaattgtgtctggt
attgtccagcgtagcgtttccatagcaacacaaacaacaaaagagcttgttttgaaggat
tatgccatggaatcagatgagacacgtatagtaaatgctgcacacctgatggttgctagt
ttggctgggagtctggctcatgtcacatgcaaggaacctctacgtgcatcaatatcaagt
caactgaggacctcacttcagggtttaaatattgcaaatgaaattcttgaacaagcagta
cagcttgttaccaatgataatcttgatcttggttgtgctgtaattgaacaggctgctact
gaaaaggcaataagcaccattgatgcggagataggtcagcagctttctttgagaaggaag
cctcgtgagggtatgggtccaacattttttgatgcaaacttgtacacacaaggttctatg
ggtggtgtgcctgagccacttcgtccaaaacctggtcagttgtcactgtcacagcaacgt
gtttatgaggactttgttcggcttccgtggcaaaaccagtctactcagagctctcattct
atggctgctggtgttggtgttcaatctggtagtgctggactcactggaacctatggtcct
ggatcaggacaggttaatccaggttactcagtgggcccgggaagcacaggctatgaagca
gtttctcgattgtcagatgatgttacagagtctaatttggcttcacagtttagtgctccc
tcaactcaccacagagcagctgatggtgttccccagcatagtgtggagaatgattctgtt
tctgccccatttccttcagcagcgtccacccctgagttgcatgactcttctgatgttgtg
aaagaatctggagcatcttcacagccacaagcttcatcagtagtggagcgccttggaagt
agtgtatccgagccttctcttacgacaagggatgctcttgataaatatcaagctgttgca
caaaagttggaagctttgatctgtaatgattctggagaagctgaaatccagggagtcatc
tctgaggttcctgaaatcattctgagatgtgttagtcgagatgaggctgccttagctgtg
gctcaaaaggtttttaaaggtttatatgataatgcatcaaacaacattcacgtgggtgct
catcttgcaattctgactgctattcgtgatgtttgcaagcttgctgtgaaggaacttact
agttgggtaatttattcagaagaagaaaggaaatttaacaaagatattacccttggtctt
attcgtagtgaattgctaaaccttgctgaatacaacgttcatatggcaaaactagttgat
gggggccggaacaaggctgcaatggagttttccatttctcttcttcaaaccttggtcatt
gaggaacccaaagttatctcagaatttcacaatcttgttgactgtttggcaaagctttct
ataaagcctggatcacctgaatcgttacagcagctggtagagacgatcaggaatccagct
gctcatgctgcttcattatctgccattggtactggaaaagaagataagaataaacaatca
agggacaaaaagagtcctggtccacttgctggcagggaggaatttaacagtgttgaatct
gttgaaccagatccttctggattacgtgagttcagtgagcaggtatccaggttgtttgca
gaatggtacaggatatgtgaccttcctggtgccaatgatgcagctgctgcccatttcatc
gtacaattacatcagaatggtctactcaagggagatgatataactgatcgctttttcagg
cttttgatggaactagctgttgcatattgcctatctcctcaacaaatgcacacaatgtca
tttcttgcaattgatatttttgccaagcttgtctatacaatattaaagggctcaagcaaa
gcccttctttccaagattttggcagttactgtcagattcattcgaaaagatgcggaggaa
aagaaggcatctttcaatccgaggccatttttcagattgttcattaattggcttcatgac
ctgggttcacttgagcctgttactgatggtgcaaaccttcagattttgactgcttttgcc
aatgcatttcatgctttgcagcccctcaacgttccaggattcagctttgtatggcttgag
ttgataagtcacagaagtttcttaccaaagatgttgactggtaatggtcagaaaggttgg
ccttacattcaaaggttgcttgtagatttgttccaattcatggagccttttctgaggcat
gctgaacttggagtgccggttcattttctctataaaggcacgctcagagtgctcctagtg
ctacttcatgactttccagagttcttgtgtgattatcattttaccttctgtgacgttatt
cctcctagctgcatacaaatgcgaaatattattctaagtgcatttcctcgtagtatgagg
ctaccagatccatccacacctaatttgaagattgatttgcttcaagaaataactttatcc
cctcgaatcttttcggaggttgatgcggcacttaaggctaagcagatgaaggctgatgta
gatgaatatctgaagacaaagccgcagggttctcaattttcgtctgaactgaagcagaag
ttgctcctctcacctaatgaagctgcctctgctgggacccgttacaatgttccattgata
aactcacttgtgttgtatgttggaatgcaggccatccaacaattgcagggacgaactccc
catgcacaatcagctgctggggcgtttcctctgtctgtattttctgtcgatgctgcattg
gaaattttcaaggctctaattgcggacttggacactgaggggcgctaccttttcctaaat
gctattgccaaccaactacgttacccaaatactcacacgcactacttttcttttatcctt
ctgtacttgtttgctgaatcaaaccaggaaattattcaagaacaaattactagagtcttg
ttagaacgccttattgttaatcgacctcatccatggggcctgctcatcaccttcattgag
ctgatcaagaaccctagatataacttctggaatcgatccttcataagatgtgccccggaa
atcgaaaaacttttcgaatcggtttctaggtcttgcggtggtccgaaaccagtggatgat
ggtattgtctcaggctgggtttctgacagttcacattga
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integrated database retrieval system
