Candidatus Pantoea carbekii US: BMSBPS_0314
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Entry
BMSBPS_0314 CDS
T03853
Name
(GenBank) DNA polymerase III delta subunit HolB
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pck
Candidatus Pantoea carbekii US
Pathway
pck03030
DNA replication
pck03430
Mismatch repair
pck03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BMSBPS_0314
03430 Mismatch repair
BMSBPS_0314
03440 Homologous recombination
BMSBPS_0314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pck03032
]
BMSBPS_0314
03400 DNA repair and recombination proteins [BR:
pck03400
]
BMSBPS_0314
Enzymes [BR:
pck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BMSBPS_0314
DNA replication proteins [BR:
pck03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BMSBPS_0314
DNA repair and recombination proteins [BR:
pck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BMSBPS_0314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
HolB_lid
FeoB_associated
BrkDBD
Motif
Other DBs
NCBI-ProteinID:
AKC32128
UniProt:
U3U8I7
LinkDB
All DBs
Position
complement(448677..449666)
Genome browser
AA seq
329 aa
AA seq
DB search
MNWYPWLNPSYKKIIDHHQQGRAHHALLIYSIKDMGDDKLVWGLSRWLMCQKRKGLKSCG
NCHGCQLMQAHTHPDWYRLEAQPGQTSVGVDAVRHIVEKLYHCAQQGGAKIVWLPYSSRL
TESAMNSILKILEEPPKNCWFFFSSIEPSYLLVTLRSRCMIISVCPPSEITSLQWLKIQQ
CTQPTEILITALRLSNGSPAAALSLLRSNRWCIRKIFCKKLLNSLNNDVLELLPILNTDH
MSDYLNWLISILVDVIKVHYGASNWLNNSDCQDIVMQLSKKFKPNSLQEDIQKWMKCRKQ
LEDIAGLNREIILTDRLLTWSSLITPLTS
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgaactggtatccttggctaaacccatcttataaaaagattattgatcatcatcaacaa
ggtcgagcgcatcatgcgttattaatttattctattaaagatatgggtgatgataagtta
gtttggggtttaagtcgttggttaatgtgccaaaagcgaaaaggattgaaaagttgcggc
aattgtcatggttgtcagcttatgcaggcacatactcatcctgattggtatcgacttgaa
gcacaacctggacaaacatctgttggtgtcgatgcagtacgtcatatagtagaaaaatta
tatcattgtgcacaacaaggaggtgcaaaaatagtatggttaccgtattcatcacgatta
actgaatcagcaatgaattctattttaaaaattctagaagaacctcccaaaaattgttgg
tttttttttagttctatagaaccttcgtatttacttgtaacgttacgtagtcgttgtatg
attatttctgtatgtccaccaagtgaaataacgagtttgcaatggctaaagatacaacaa
tgtacacaaccaacagaaatattaataacagctttaaggctgagcaatggatcccctgct
gcagcattgtcattattacgatctaatcgttggtgtataagaaaaattttctgcaaaaaa
cttttaaattccctaaacaatgatgtgctagagcttttaccaatcttaaacactgatcat
atgagtgattatctaaattggctgatatcaatactggtagatgtaataaaagtgcattat
ggggctagcaattggttgaataatagtgattgtcaagatatagtaatgcaactatcaaaa
aaatttaagcctaattctttacaagaagacatacaaaaatggatgaaatgtcgcaaacaa
cttgaagatatcgcaggacttaatcgtgaaataattctaaccgatcgattattaacgtgg
tcgagtttaattactcctctgacttcatag
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