Phanerochaete carnosa: PHACADRAFT_173680
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Entry
PHACADRAFT_173680 CDS
T03128
Name
(RefSeq) hypothetical protein
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
3.6.4.13
]
Organism
pco
Phanerochaete carnosa
Pathway
pco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHACADRAFT_173680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pco03041
]
PHACADRAFT_173680
Enzymes [BR:
pco01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
PHACADRAFT_173680
Spliceosome [BR:
pco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PHACADRAFT_173680
Complex C
U5 SnRNP specific factors
PHACADRAFT_173680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-GeneID:
18909642
NCBI-ProteinID:
XP_007395865
JGI:
Phaca1_173680
UniProt:
K5WYG0
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MASSRSQPLSIETLLQKQKEEKESAAKPKFLTKEQRAKLALEKREQEIREQKEREERARQ
ERETLERGAEEHRQKQRERERAAPSTPLITDSAEYVPPMTDNDLSAIRSRYLGVDKKKRK
IRKMNDRKFVFDWDEQDDTFSAEAPAAVGSQRQGAQVMFGRGHIAGMDDGGTVVPGKKND
AEGPGTQLADALERRRAAKTGIDERHWSEKKLEEMRERDWRIFREDFSIASRGGQIPHPL
RSWTESDIPQLLLDVIERIGYKEPSPIQRQAIPIGLQNRDIIGIAETGSGKTAAFVIPML
SFISKLPLFTDENRHLGPYSLILAPTRELAQQIESETKKFAGSLGFTCVSIVGGRAVEEQ
QFNLRAGAEIIIATPGRLKDVIERHVIVLSQCRYIVMDEADRMVNLGFEADLTFILDKLP
SDTMEGEDQGEQMDIDGETMIKKGRTRVTTLFSATMPPPVERLAKKYLKRPAIITIGEAG
RAVDTVEQRVEFVTGDEKKKQRMLEILNSGQYASPIIAFVNQKKTADMVAKDLQRAGWNA
ATLHSGKNQEQREAALQSLRTGEADILVATDLAGRGIDVTDVTLVINYQMSNTIEAYVHR
IGRTGRAGKQGTAITFLTNDDEEVMYDLRQEISKSPVSKVPPELAKHEAAQHKVSKEMKR
KRDAEDQG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcgagttcaagatcacagcctctatccatagagacgctgttgcagaagcagaaagaa
gagaaagaatccgctgccaagcccaaattcctcacgaaggagcaacgagccaagcttgct
ctggagaagagggagcaggagattagagaacagaaggaaagagaggaacgagctaggcaa
gagcgcgagacgctagagagaggagcggaggagcatcgtcaaaagcagagggaacgtgag
cgtgctgcaccctcaacacctcttatcaccgactctgcggagtacgtcccgcccatgacc
gacaacgacctgtcggctatccgttcgcggtatcttggagtggataagaagaaacgtaag
atacgtaagatgaacgatcgcaagttcgtctttgattgggacgagcaagacgatacgttc
tctgcggaggcacctgctgcggtggggagtcaacgacagggtgcgcaggtcatgttcgga
cgtggccatatcgctggtatggacgatggaggcactgttgtgcccggcaagaagaatgat
gcggaaggccctggaacgcaactggcggatgcattggaacgtaggagagctgcgaagacc
ggtatcgacgagaggcactggtctgagaagaagctggaagagatgagggagcgtgactgg
cgcatcttccgagaagacttcagcatcgcttcccgaggtggtcaaatcccccatccatta
cgctcctggacagaatccgatattcctcagcttctattggatgtaatcgagcgcattggc
tataaggagccctcgcccattcaacgtcaagccatccccatcggtctacagaatcgggat
atcatcggtattgctgaaacaggttccggtaagactgctgctttcgtcattccgatgctc
tccttcatctccaagttgcccctgttcacggacgagaacagacatctcggtccctactct
ctcattctcgctcctactcgtgaactggctcagcagattgagtcggaaacaaagaagttc
gctggttcgcttggcttcacttgtgtgtctatcgttggtggtcgcgctgtcgaagagcaa
caatttaacctgcgagctggtgcagaaataatcatcgccactccaggtcgtttgaaggat
gttatcgagcgtcatgttattgtgctatcacaatgtcggtacattgtcatggacgaagcc
gatcggatggtcaacctcggtttcgaggccgacctgacgttcatcttggacaagctaccg
agtgatactatggagggagaggaccaaggcgagcagatggacatcgacggcgaaacgatg
atcaagaagggtcgaacgcgagtcacgacgctcttctctgctactatgcctccgcccgtc
gaacggcttgcgaagaagtacctaaagcggcctgctatcatcacgatcggtgaagccggt
cgcgctgtcgacactgtggaacagagagttgagttcgtcactggagacgaaaagaaaaag
caacgcatgctcgagatcctcaacagcggtcagtatgcgtctcccatcatcgcgttcgtc
aaccagaagaagacggcggatatggtcgccaaggatttacaacgcgctgggtggaacgca
gcgactctgcactcgggcaagaaccaagaacagcgggaagctgccttgcagtccctccgt
acaggagaagccgacattctcgtcgctaccgatcttgccggacgtggtatcgacgtgacc
gacgtcacattggttatcaactatcagatgtccaacacgatcgaggcctatgtgcaccgt
attggtcgcacaggtcgtgctggcaaacagggaacggcgattaccttcctgaccaatgat
gacgaggaggttatgtacgatctcaggcaagaaatctcgaagagtccagtgtccaaagtc
ccgccggagctggcgaaacacgaagctgcgcagcacaaagtttcaaaagagatgaagcgc
aagagggacgccgaggaccaaggctaa
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