Phasianus colchicus (Ring-necked pheasant): 116240621
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Entry
116240621 CDS
T07365
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc04510
Focal adhesion
pcoc04512
ECM-receptor interaction
pcoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116240621 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116240621 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116240621 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pcoc00535
]
116240621 (COL9A1)
Proteoglycans [BR:
pcoc00535
]
Extracellular matrix (ECM) proteoglycans
Others
116240621 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
116240621
NCBI-ProteinID:
XP_031466928
LinkDB
All DBs
Position
Unknown
AA seq
920 aa
AA seq
DB search
MKSNWKITAFLCMCSFLGSFISATIQQQSRLPVILGARQRTDLCPTIRIGQDDLPGFDLI
SQFQIEKAASQGIVQRVVGSTALQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWQIQDSSGKEQVGVNLNGPMKSVEFSYKGVDGSLQTASFLHLPFLFDSQW
HKLMISVETNSVTLFIDCIKVESLNIKPKGKISVDGFAVLGRLKNNPQISVPFEVQWMLI
HCDPLRPQREGCGELPARISQTVIERGLPGPPGPPGPPGPPGVPGIDGIDGERGPNGPPG
PPGPDGDAGKAGSPGLPGEPGADGLTGPDGSPGATGPKGQKGEPGPPGARGLPGKGLLGP
PGPAGAAGLPGEVGRAGPPGDPGKRGPPGPPGPPGPRGTIGLQDGDPLCPNACPPGRPGH
AGLMGMKGQKGSKGESGEPGKQGYKGEEGDQGPIGEVGAQGPPGILGIRGITGITGPKGN
KGARGLDGDPGPQGLPGAPGDQGQRGPLGEEGPKGERGPQGTRGINGLPGPKGESGLPGV
DGREGIPGMPGAKGEPGKPGAPGDTGPQGLPGLPGSPGMKGIPGPKGNRGPPGVPGVMGN
SGKPGEQGPEGEAGPTGPRGPPGSRGEPGPAGPPGLPGKWGPQGDIGLPGLPGPPGLPGG
KGDRGSAGEPGPKGEQGAPGSEGDAGEKGDLGDMGLPGAKGSVGNPGDPGSRGPEGSRGL
PGMEGPRGAPGPRGLQGERGAPGLPGSQGPAGKEPTDQHIKQVCMRVMQEQLSQLAASLR
RPEFGAPGLPGRPGPPGAPGPPGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEAGERGE
RGFPGRGVKGLPGPRGLPGEPGKPSYGREGRDGVRGPPGVAGQPGIPGPPGPPGPPGYCE
PSSCRMQAGQRAAGKNMKGP
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaactggaaaattacagctttcttgtgtatgtgtagttttctggggtctttc
atctcggctaccatccagcagcaatcaagattgccagtcattctgggtgctcgtcagaga
actgatctctgcccaacaatcaggattggccaagatgacttaccaggctttgacctgatt
tctcagttccagatagaaaaagctgcttctcaaggaattgtccagagagtagtgggctcc
actgctctacaagtggcttataaattgggacccaatgtagacttcaggattccaaccagt
gcaatatattccaatggattgcctgatgaatattcctttcttactacttttcggatgact
ggagccacacttcaaaaatactggactatttggcagattcaggattcttcaggaaaagaa
caagtcggagtgaatctcaatggtccaatgaaaagtgttgagttttcttataaaggagtg
gatggaagtctccagactgcatcatttttacatttgcctttcttgtttgattcccaatgg
cacaagcttatgataagtgtggaaacaaacagtgtcacacttttcatagactgtataaaa
gtagaatccctaaacataaaaccaaaggggaaaatcagtgttgatggcttcgctgtgctt
ggaagactcaaaaataatcctcaaatttcagttccgtttgaagtccagtggatgctgatt
cactgcgatcccctgcggccccagagagaaggctgcggtgagctcccagcccggataagc
cagacagtgattgagagaggtctccctggtccaccaggccccccaggtccaccagggcca
ccaggagttcctggcattgatggcattgatggagagagaggacctaacggccccccagga
ccaccgggtccggatggggatgcaggcaaagcaggatccccaggcctgcctggagagccg
ggagctgatgggttaacgggccctgatggatcaccaggtgccacaggaccgaaaggacag
aagggtgagccaggacctccaggtgctcgtggtcttccgggcaagggtcttcttgggcca
cctggtccagctggtgctgcaggactgcctggtgaagtgggccgtgctggcccacctgga
gatccaggaaaaagggggccaccaggacctccgggaccaccaggccctcgaggaacaatt
ggtctgcaagatggtgacccattgtgtcccaatgcttgtccacctggccgtccaggacat
gctggcctaatgggaatgaagggacaaaaaggctcaaaaggagaatctggtgaaccagga
aaacaaggttacaagggtgaagaaggggatcaaggacccattggtgaagttggagctcaa
ggccctccaggcatactaggtatcagaggtataactggaataacaggacctaaaggtaac
aaaggagctcgtggccttgatggtgatcctggtccccaaggtcttcctggtgcacctggg
gatcaaggacagagaggtccactgggagaagagggtccaaagggagaaagaggtcctcaa
gggacaagaggaataaatggtctccctgggcctaaaggagagtctggcttgccaggagtt
gatggccgggaaggtatccctggaatgcccggagcaaagggtgaaccaggaaaacccggt
gctccaggtgatacaggacctcagggtttgccaggtttaccaggctctccaggcatgaaa
gggattcctggcccaaagggtaatagaggtcctcctggagtgccaggtgtgatgggaaat
tctggcaaaccgggtgagcagggaccagagggagaagcaggtcctacaggaccccgggga
ccaccaggtagcagaggagagccaggtcctgcaggtcctccaggtttaccagggaaatgg
ggtccccagggtgacatcggacttcctggactgccaggtcctccaggcctacctggtggt
aagggtgatcggggttcagcaggtgaaccaggacctaagggtgaacaaggtgcacctgga
tcagaaggagatgcaggagaaaagggtgacttaggtgatatgggattaccaggtgcaaag
ggatctgttggtaatcctggagatcctggttctcgtgggccagagggaagtcggggactg
cctggcatggaagggccacgaggtgcacctggaccacgaggcttgcagggtgaacggggt
gctccaggtctgcctggtagccaaggtccagctggaaaagaaccaactgatcagcacatt
aagcaggtctgcatgagagttatgcaagaacaactctctcagctggcagccagtcttagg
cggccagaatttggtgctccaggtcttcctggccgacctggacctccaggtgctccaggg
ccacctggggaaaatggtttcccaggacaacttggacctcgtggcttgcctggccttaag
ggccctcctggtgagattggtcgtaaaggtcctaaaggtgaagcaggagaaaggggagaa
agaggatttccaggcagaggagtgaaaggtctcccaggaccgagaggtcttccaggtgaa
ccaggcaaacccagctacggcagggaaggccgtgatggtgtacgaggtccccctggggtg
gccggtcaacctgggattcccggccctcctggccctcccggccctcctgggtactgcgag
ccgtcgtcttgccgaatgcaggctggacagagagctgctggtaagaacatgaaagggccg
tga
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