KEGG   Pandoraea commovens: NTU39_11030
Entry
NTU39_11030       CDS       T08365                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
pcom  Pandoraea commovens
Pathway
pcom02024  Quorum sensing
pcom03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pcom00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NTU39_11030 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NTU39_11030 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcom03019]
    NTU39_11030 (hfq)
   03036 Chromosome and associated proteins [BR:pcom03036]
    NTU39_11030 (hfq)
Messenger RNA biogenesis [BR:pcom03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     NTU39_11030 (hfq)
Chromosome and associated proteins [BR:pcom03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    NTU39_11030 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UVA81494
UniProt: A0A5E4W334
LinkDB
Position
2359975..2360211
AA seq 78 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPEAEQS
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaacttctacaagacccgtttctgaacgccttgcgtaaggagcat
gttcccgtctcgatctatctggtcaacggtatcaagctgcagggaaacatcgagtcgttc
gaccagtatgtcgtcctgctgcgcaacacggtcactcaaatggtttacaagcatgccatt
tcgacggtcgtgcctgcgcgtccggtgaatttccatccggaagccgagcagtcctga

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