Pandoraea commovens: NTU39_25260
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Entry
NTU39_25260 CDS
T08365
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NTU39_25260 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcom03021
]
NTU39_25260 (rpoB)
03400 DNA repair and recombination proteins [BR:
pcom03400
]
NTU39_25260 (rpoB)
Enzymes [BR:
pcom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NTU39_25260 (rpoB)
Transcription machinery [BR:
pcom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NTU39_25260 (rpoB)
DNA repair and recombination proteins [BR:
pcom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NTU39_25260 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DNAPolymera_Pol
RnfC_N
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
UVA79266
UniProt:
A0A5E4ZCF6
LinkDB
All DBs
Position
complement(5607010..5611116)
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRPTVHKVPFLLATQLASYTSFLQADALASERKPEGLQAAFSSI
FPIVSHNGFARLEFVSYLLGTPAFDVKECQQRGLTFCSALRAKVRLVILDKESPNKPVVK
EVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFKLMPE
GAQMEFVPERLRGEVARFDITDREGKVIVQKDKRVNAKHIRDLENANTKFISVPEDYLLG
RVLAKNVVDGDTGEVIANANDEITESVLLKLRESGVSDIQTLYTNDLDQGSYISATLRID
ETADKTAARIAIYRMMRPGEPPTEDAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGRDEV
LGPMTLDDDDILATIKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
EDGKVTDQIDYLSAIEEGRYVIAQANASIGASGELTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT
TVQAFRGGVVDYVDAGRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVEVG
DKVARGDVIADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
GYRLDLNDQLRIVEGDAFQRLERFLVGKTANGGPKKLAKGTKITKEYLADLDRYHWFDIR
LAEDEGAQQLEQIKESIEQKRHSFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADIVLNPLGVPSRMNVGQILESHLGWAA
KGLGWRIGEMLQAHTKVQELRKFLTKIYNESGQQEDIDSLSDDEIMSLARNLQNGVPFAT
PVFDGAHEEEIRRMLDLAFPDHIAKELGMTKSKNQVTLFDGRTGEAFERTVTCGFMHMLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERG
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactattccttcaccgagaagaaacgcattcgcaagagttttgcgaagcgtccgacc
gtgcacaaggtgccgtttttgctggccacccagctcgcctcgtacacatcgttcttgcaa
gccgatgcgcttgcatcggagcggaagccggagggtctgcaagcagccttctcctccatt
ttcccgatcgtttctcacaacgggttcgcacgcctggagtttgtcagctatctgcttggc
acgcctgcgttcgatgtcaaggaatgccaacagcgcggcctgaccttctgctcggccctg
cgcgccaaggttcgtctggtgattctcgataaggaatcgccgaataagccggtagtcaag
gaagtcaaggaacaggaagtgtacatgggcgaaattccgctcatgacctcgacgggttcc
ttcgtcatcaatggcacggaacgtgtcatcgtctcgcagctgcaccgttcgccgggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaaactgctgttctccgcgcgt
atcatcccctaccgcggctcgtggctcgacttcgaattcgatccgaaggacattctgtac
ttccgcgttgaccgccgtcgcaagatgccggtcacgatcctgctcaaggccatcggcctg
acgccggaacagatcctcgcgaacttcttcgtgttcgacaacttcaagctgatgccggaa
ggcgcacagatggagttcgtgccggagcgtctgcgcggtgaagtggctcgcttcgacatc
acggatcgcgaaggcaaggtcattgtccagaaggacaaacgcgtcaacgccaagcacatc
cgcgacctcgagaacgccaacaccaagttcatctcggtgccggaagactatctcctcggc
cgtgtgctcgcgaaaaacgtggtcgatggcgacaccggcgaagtgatcgccaacgctaac
gacgaaatcaccgaaagcgtgctgctcaagctgcgcgagtcgggcgtgtcggacatccag
acgctgtacacgaacgatctggaccagggttcgtacatctcggccacgctgcgtatcgac
gagaccgccgacaagacggctgcgcgtatcgcgatctatcgcatgatgcgcccgggcgag
ccgccgaccgaagatgcggtcgaggcgctgttcaaccgtttgttctacagcgaagaagcg
tacgacctgtcgaaggtgggtcgtatgaagttcaaccgtcgtgtcggccgtgacgaagtg
ctcggaccgatgacgctggacgacgacgatattctcgcgaccatcaagatcctcgtggat
ctgcgtaacggccgcggcgaagtcgacgacatcgaccacttgggtaaccgtcgtgtgcgt
tgcgtcggcgaactggcagagaaccagttccgcgccggtctcgtgcgtgtcgagcgcgct
gtgaaggaacgtctgggtcaggccgagtcggaaaacctgatgccgcacgacctgatcaac
agcaagccgatttcgtcggccattcgcgaattcttcggttcgtcgcagttgtcgcagttt
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgtgtttccgcactgggc
ccgggcggtctgacgcgcgagcgtgcgggctttgaagttcgcgacgtgcacccgacccac
tatggccgcgtgtgcccgatcgaaacgccggaaggtccgaacattggtctgatcaactcg
ctggcactgtacgctcgcctgaacgaatacggcttcctcgagacgccgtatcgcaaggtg
gaagacggcaaggtcaccgaccagatcgactacctgtcggccattgaagaaggtcgttac
gtgatcgcccaggcgaacgcgtcgatcggcgccagcggcgaactcaccgacgaactcgtg
tcgtcgcgtgaagccggtgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcaccgtcgcagatcgtctcggtcgcagcctcgctgattccgttcctcgaacacgat
gacgcgaaccgcgcattgatgggttcgaacatgcagcgccaggccgtgccttgcctgcgt
ccggaaaaggcggtcgtcggtacgggtatcgaacgtacggtggccgttgactcgggtacg
accgtgcaggcgttccgtggcggtgtggtcgactacgtcgatgcaggccgtgtggtgatt
cgcgtgaacgacgacgaagccgttgccggtgaagtcggcgtggacatctacaacctgatc
aagtacacgcgttcgaaccagaacaccaacatcaaccagcgtccgatcgtggaagtgggc
gataaggttgcgcgcggcgatgtgatcgccgacggcgcgtcgaccgacctgggtgagctg
gcgctgggtcagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaagac
tcgatcctgatctcggaacgtgtcgtcgcggaagaccgttacacgtcgatccacatcgaa
gaactgaacgttgtcgctcgcgacacgaagctcggaccggaagaaatcacgcgcgacatc
tcgaacctggcggaagtgcaactgagccgtctggacgagtcgggcatcgtgtacatcggt
gcagaagtcgaagccggtgacgtgctggtgggcaaggtcacgccgaagggcgaaacccag
ctcacgccggaagaaaagctgctgcgcgcgatcttcggcgagaaggcttcggacgtgaag
gacacctcgctgcgcgtgccgtcgggcatgagcggcacggtcatcgacgtgcaagtgttc
acgcgtgaaggcattcagcgcgacaagcgcgctcagcagatcatcgacgatgaactgaag
ggctaccgcctcgacctgaacgaccagttgcgtatcgtggaaggcgacgcattccagcgt
ctggagcgtttcctggtgggcaagaccgccaatggcggcccgaagaagctcgccaagggc
accaagatcaccaaggaatacctggccgatctggatcgctaccactggttcgacatccgt
ctggcagaagacgaaggtgcgcaacagctcgaacagatcaaggaatcgatcgagcagaag
cgtcactcgttcgacctggctttcgaagagaagcgcaagaagcttacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctggcggtcaagcgtcgtctgcag
cctggcgacaagatggccggccgtcacggtaacaagggtgtggtctcgaagatcgtgccg
atcgaggatatgccgtacatggccgatggccgtccggcagacatcgtgctcaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcagattctcgaatcgcacctcggctgggcagcg
aagggtctgggctggcgtatcggcgaaatgctgcaagcgcacacgaaggtccaggagctt
cgcaagttcctgacgaagatctacaacgagagcggtcagcaagaagatatcgacagcctg
tcggacgacgaaatcatgtcgttggcacgcaacctgcagaacggtgttccgttcgcgacg
ccggtgttcgatggcgcgcatgaagaggaaatccgtcgcatgctggatctggcgttcccg
gatcacatcgcgaaggaactcggcatgaccaagtcgaagaaccaggtcacgctgttcgac
ggtcgcactggcgaagccttcgagcgtacggtcacttgcggcttcatgcacatgctcaag
ctgcaccacttggtcgacgacaagatgcacgcacgttcgaccggtccgtactcgctggtg
acgcaacagccgttgggcggtaaggctcagttcggtggtcagcgcttcggtgaaatggaa
gtgtgggcactggaagcttacggcgcatcgtatgtgctgcaggaaatgctgacggtgaag
tcggatgacgtgacgggtcgtacgaaggtgtacgagaacctcgttaagggcgatcacgtg
atcgatgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgttcgctcggt
atcgatatcgacctggagcgcggttaa
DBGET
integrated database retrieval system
