Pseudomonas chlororaphis subsp. aurantiaca: JM49_15955
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Entry
JM49_15955 CDS
T03338
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JM49_15955 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcp03400
]
JM49_15955 (ligD)
Enzymes [BR:
pcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JM49_15955 (ligD)
DNA repair and recombination proteins [BR:
pcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JM49_15955 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Peptidase_M29
Motif
Other DBs
NCBI-ProteinID:
AIS13095
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Position
3498006..3500531
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AA seq
841 aa
AA seq
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MARSLSEYQRKRNFAITSEPAADKPSSKSASALRFVIQKHDARNLHYDFRLELGGSLKSW
AVPKGPSLDPTQKRLAVHVEDHPLSYGNFEGSIPAGQYGAGDVIVWDHGVWQPHDDPEAS
YRAGKLKFTLIGEKLGGDWTLVRTHMRGSGDKEQWLLIKEQDARARPSDEYDVVQALPRS
VLSGATVGDNKSAKPQATKKAEKKSPGKKAAVLPQSLAPQLATLVDKAPSGDWRYEIKFD
GYRILARIQDDEVRLLTRNGHDWTSRLPQQAKALAALKLKDSWLDGEMVVLNDQGLPDFQ
ALQNAFDIGRSVDIIYYLFDAPFLQGEDLRETPVEERRQALKQALGRKSSKVLRFSEAFA
AHHQDVLESACALSLEGVIGKRAGSPYVSRRSADWIKLKCRLRQEFVVVGYTRPQGSRSG
FGALLLGVNDASGLVYAGRVGTGFDQKTLNQLHERMQELERDSSPLAKPLTAAQARGVHW
IEPQLVAEAEFAEWTREQVVRQAAFIALRSDKPASEIVRERPQTSKAVEPRSRSTPARSE
RSAAHSVAGVKITHPERVIDQQSGTSKLQLAQFYASIDQQILPHLRDRPVSLLRAPEGVE
GEQFFQKHAEHLAIPNIRHLDPALDPGHARLMEIDSTSALIGAVQMGTIELHTWGATHDQ
IETPDLFVLDLDPDPALPWKSMLEATQLTLSVLDELGLQAFLKTSGGKGMHLIVPLARKA
DWETVKGFAKAVAQFMAQQLPERITATMGPKNRVGRIFVDYLRNTRGASTVAAYSVRARP
GLPVSVPIARDELGDVRHAQQWNVANLSQRLEALTEDPWHGYAHRQRITAKMWQQLGADK
P
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggccagatccttgagtgaataccagcgcaagcgcaacttcgcgatcacctcggagccg
gcggcggacaaaccgtccagcaaatccgcctcggccctgcgcttcgtgatccagaagcac
gatgcgcgcaacctgcactacgactttcgcctggaactgggcggcagcctgaaaagctgg
gcagtgcccaagggcccgagcctggaccccacgcaaaaacgcctggcggtgcatgtcgaa
gaccacccgctgagctatggcaatttcgaaggcagcatcccggccgggcaatacggcgcc
ggcgacgtgatcgtctgggaccatggcgtctggcaaccccatgacgaccccgaggccagc
taccgggcgggcaagctcaagttcaccctgatcggcgagaagctcggcggcgactggacc
ctggtgcgcacccatatgcgcggcagcggcgacaaggaacagtggctgctgatcaaggag
caggatgcccgggcgcggccgagcgacgagtacgacgtggtccaggccctgcccaggagc
gtgctcagcggtgccacggtgggcgacaacaagagcgccaagccccaggcgacaaaaaag
gccgagaagaaatcgccgggtaaaaaagccgcggtcctgccgcaaagcctggcgccgcag
ctggcaaccctggtggacaaggcacccagcggcgactggcgctatgagatcaagttcgac
ggctaccggatcctggcgcggatccaggacgacgaggtgcgcctgctgacccgcaacggt
cacgactggaccagccgcctgccccagcaagccaaggccctggccgccctgaagctcaag
gacagctggctggacggcgaaatggtggtgctcaatgaccaaggcctgccggacttccag
gcattgcagaacgccttcgatatcggccgcagcgtggacatcatctattacctgttcgac
gcgccctttctgcagggcgaggacctgcgcgaaacgccggtggaagaacgccgtcaggcg
ctcaagcaggcgctcgggcgcaagtcgagcaaggtcctgcgcttttccgaagcctttgcc
gcccaccaccaggacgtcctcgaaagcgcctgcgccctgtctctcgagggggtcatcggc
aagcgcgccggcagcccctatgtgtcgcgccgcagcgccgactggatcaaactcaaatgc
cggctgcgccaggagttcgtggtagtcggctatacccgcccgcaaggttcgcgcagcggc
tttggcgccctgctgctgggggtcaacgacgcgagcgggctggtatacgccggccgggtc
ggcaccggtttcgaccagaagaccttgaaccagctgcatgagcggatgcaggaacttgaa
cgggattcatcgcccctggccaagcccctgaccgcggcccaggcccgcggcgtgcactgg
atcgaaccgcaactggtggccgaagccgagttcgccgagtggacccgcgaacaggtggtg
cgccaggcagccttcatcgccctgcgcagcgataagccggccagcgaaatcgttcgcgag
cgaccacagacctccaaagccgtcgagccccgcagccggagcacgcccgcccgttcggag
aggtcggccgcccacagcgtcgccggggtcaagatcacccacccggaacgggtcatcgac
cagcagtccggcaccagcaaactgcaactggcgcagttctacgccagcatcgaccagcag
atcctgccgcacctgcgcgaccggccggtgtcgctgctgcgggcgcctgagggagtggaa
ggcgagcagtttttccagaaacatgccgagcacctggccatccccaatatccgtcacctc
gacccggcgctggaccccggccacgcgcgactgatggaaatcgacagtacttcggcgctg
atcggcgcggtgcagatgggcaccatcgagctgcacacctggggcgcgactcacgatcag
atcgaaaccccggacctgttcgtgctcgacctcgacccggacccggccctgccctggaaa
agcatgctggaagccacccaactgaccctgtcggtgctcgatgagctgggcttgcaggcc
ttcctgaaaaccagcggcggcaaaggcatgcacctgatcgtgccgctggcgcgcaaggcc
gactgggaaacggtcaagggcttcgccaaggccgtcgcgcagttcatggcgcagcagttg
ccggaacgcatcaccgcgaccatgggcccgaaaaaccgggtcggcaggatcttcgtcgat
tacctgcgcaacacccgcggcgccagtaccgtggcggcctattcggtacgggcgcgcccg
gggctaccggtctcggtgcctatcgcccgggatgagctgggcgatgtccggcatgcccag
cagtggaacgtggcgaacctgagtcagcgcctggaggccttgaccgaggatccgtggcac
ggctacgcccatcggcagcggatcaccgcgaagatgtggcagcaattgggagcggacaag
ccttga
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