Pseudomonas chlororaphis subsp. aurantiaca: JM49_23180
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Entry
JM49_23180 CDS
T03338
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JM49_23180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcp03400
]
JM49_23180
Enzymes [BR:
pcp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
JM49_23180
DNA repair and recombination proteins [BR:
pcp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JM49_23180
Prokaryotic type
JM49_23180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AIS14456
UniProt:
A0AAJ1E5E3
LinkDB
All DBs
Position
complement(5091199..5091891)
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AA seq
230 aa
AA seq
DB search
MTDDDRIKLEPSWKQALRAEFDQPYMAELREFLRQEHAAGKEIYPPGPLIFNALNSTPLD
KVKVVILGQDPYHGPGQAHGLCFSVQPGVPAPPSLVNIYKELKRDLNIDMPNHGYLQSWA
DQGVLMLNTTMTVQRANAASHAGRGWQHFTDRIIEVVSQHQPHLVFLLWGSHAQSKQKLI
DATKHLVLTSVHPSPLSAYRGFIGCGHFSRTNKYLEQNGETPIEWRLPPV
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgacgaccgtatcaaactcgaacccagctggaagcaggcgctgcgtgccgaa
ttcgaccagccttacatggcggagttgcgcgagttcctgcgtcaggaacatgccgccggc
aaggagatctacccgccgggcccgttgatcttcaacgcgctgaattccacgccgctggac
aaggtcaaggtggtgatcctcggccaggacccttaccacggcccgggccaggcccatggc
ctgtgcttctcggtgcagccgggcgtaccggcgccgccgtcgctggtgaacatctataaa
gagctcaagcgcgacctgaacatcgacatgcccaaccacggctacctgcagagctgggcc
gaccagggcgtgttgatgctcaacaccaccatgaccgtacagcgggccaacgccgcttcc
cacgcgggcaggggctggcagcatttcaccgaccggatcatcgaagtggtgagccagcac
cagccacacctggtgttcctgctgtggggttcccacgcccagagcaagcagaagctgatc
gatgccaccaagcacctggtgctgacctcggtgcacccgtcgcccctgtcggcgtaccgc
ggctttatcggttgcgggcatttcagccggaccaacaaatacctcgagcagaatggcgag
acaccgatcgaatggcgcttgccgccggtttga
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