Porphyromonas crevioricanis: NCTC12858_00528
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Entry
NCTC12858_00528 CDS
T05510
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pcre
Porphyromonas crevioricanis
Pathway
pcre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12858_00528 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcre03019
]
NCTC12858_00528 (rny)
Messenger RNA biogenesis [BR:
pcre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12858_00528 (rny)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
ATG14
Cas3_HD
DUF4407
Motif
Other DBs
NCBI-ProteinID:
SQH72701
UniProt:
A0A0A2FJN7
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Position
1:complement(566912..568456)
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AA seq
514 aa
AA seq
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MAVESTTLIIAIMTFLLGLVVAWAVQRSLLKQKAAKRLAEAERESEVIKQKKLLEVKERF
IQLKSDLEKQVNQRTAKLQQSESKIRNRERNLVQKQEELAKKNQELDTIRENLTAQMGIL
DNKQKELDDLSRRQREQLESLSGMSAEEAKNYLVENLKDEAKNEASGYINDIIEEAKMTA
NKEAKRIVIQSIQRVATETAIENSVTVFHIENDEIKGRIIGREGRNIRALEAATGIEIIV
DDTPEAIVLSGFDPVRREVARLALHQLVQDGRIHPARIEEVVAKVRKQIEEEIIETGKRT
MIDLGIHGLHPELIRLVGKMKYRSSYGQNLLQHSRETANLCAVMASELGLNPKKAKRAGL
LHDIGKVPDDEPELPHALLGMKLCQKYKEKPDICNAVGAHHDETEMTSLLAPIVQVCDAI
SGARPGARREIVEAYIKRLNDLEQLALSYPGVIKTYAIQAGRELRVIVGAEHTDDNSIAT
LSNEIARRIQEEMTYPGQVKITVIRETRSVSYAK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcagtagaaagcacaaccttgatcatagcgatcatgacttttttgctgggcctggtc
gtagcctgggccgtgcagcgatctcttttgaagcaaaaggccgctaaaagattggccgaa
gcagaaagagaatcggaagttatcaaacagaaaaaactcctcgaagtaaaggaacggttt
attcagctcaagtccgatctggagaagcaagtcaatcagcgtacagccaagttgcaacag
tccgagagcaaaatacgcaatagagagcgcaacctcgtgcaaaagcaagaagaacttgca
aagaaaaaccaagagttagataccattcgggaaaatctgacagcccaaatgggtattctc
gacaataagcagaaggagcttgacgatctgtcacgtagacaaagagagcagctggagtct
ctctccggaatgtctgccgaggaagcaaagaactacttggtagaaaatctgaaagatgaa
gccaagaatgaggcctccggctatatcaatgatatcatcgaagaagccaaaatgacggca
aacaaggaagccaagcgcatcgtgatacaaagcatacagcgagtggctactgaaactgcc
atcgaaaactctgtaacagtcttccatatagaaaatgacgagatcaagggtcggatcatc
ggacgtgagggacgcaatatccgggccttggaagctgctaccggtatagagatcattgtg
gacgatacacctgaggcgattgtgctctccggcttcgatccggtacgcagagaagtggct
cgtctggccttacaccaactggtacaggatggacgcatccacccggcacgcatcgaagag
gtagtagccaaagtgagaaagcagatagaggaagagatcatagagacaggtaagcgcaca
atgatcgacctcggtatccacggtctgcaccccgagctgatacgtcttgtcggtaaaatg
aagtatcgctcttcctatggacaaaaccttctccaacactcccgagaaacagccaatcta
tgtgcagtgatggcttcagaattggggctcaacccaaagaaagccaagcgagccggcctg
ttgcacgacataggtaaagtgccagatgacgaacccgaattgccacatgctctgctgggg
atgaagctctgccagaaatacaaggaaaaaccggatatatgcaatgctgtaggtgcacat
cacgatgaaaccgagatgacctctctattggcacctatcgtgcaggtgtgcgatgccatc
agtggtgctcgccccggtgcacgtcgtgagattgtcgaggcttatatcaaacgtctcaac
gacttggagcagttagctctctcctaccccggtgtaataaaaacgtacgctattcaggcc
ggtcgtgagttgcgtgtgatagtaggggccgaacataccgatgacaactcgattgcgacc
ctatccaacgaaattgcaaggcgcatacaagaggaaatgacctacccgggacaggtcaag
attaccgttatacgcgaaactcgctcagtgagctacgccaaataa
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