Psilocybe cubensis (magic mushroom): JR316_0001930
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Entry
JR316_0001930 CDS
T08288
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03018
RNA degradation
pcub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
JR316_0001930
09123 Folding, sorting and degradation
03018 RNA degradation
JR316_0001930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcub03019
]
JR316_0001930
03041 Spliceosome [BR:
pcub03041
]
JR316_0001930
Messenger RNA biogenesis [BR:
pcub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
JR316_0001930
mRNA degradation factors
5'-3' decay
Lsm complex
JR316_0001930
Spliceosome [BR:
pcub03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
JR316_0001930
Complex C
U2 snRNP components
JR316_0001930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
S-antigen
Motif
Other DBs
NCBI-GeneID:
71968251
NCBI-ProteinID:
XP_047752651
LinkDB
All DBs
Position
2:complement(1345036..1345701)
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AA seq
139 aa
AA seq
DB search
MLIFSVFKTLTDQQVTVELKNDLSITGVLKSVDQFLNIRLDNIKVADENRHPHMMAVKNC
FIRGSVVRYVQLPPEHVDTQLLEDATRREQKTVDVDLSLYFFIARMYIIFTSRQMIYLHK
QLSNLYGQVDASEVGFLDE
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgctaatcttctccgtattcaagactctgaccgaccagcaggtcactgtggagcttaaa
aatgacctctcaatcactggtgttctgaaatcggtcgaccagttcctgaacatccgactt
gataatatcaaagtggcggatgagaacagacatccacacatgatggcagtaaagaactgt
ttcattcgcggatctgtcgtccgatatgtccagcttccaccggagcacgtcgatacccag
cttctagaagacgcgacgcgtagagaacaaaagacagtagacgtcgatctatccctttac
ttctttatcgcaagaatgtacattatattcacttcacgacagatgatctatttacacaag
caactctccaatctatacggtcaagttgacgcgagtgaggtcggatttttggatgaatga
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