KEGG   Psilocybe cubensis (magic mushroom): JR316_0002631
Entry
JR316_0002631     CDS       T08288                                 
Name
(RefSeq) RNA processing protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
pcub  Psilocybe cubensis (magic mushroom)
Pathway
pcub03018  RNA degradation
pcub03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcub00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    JR316_0002631
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JR316_0002631
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcub03019]
    JR316_0002631
   03041 Spliceosome [BR:pcub03041]
    JR316_0002631
Messenger RNA biogenesis [BR:pcub03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     JR316_0002631
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     JR316_0002631
Spliceosome [BR:pcub03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    JR316_0002631
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 71968952
NCBI-ProteinID: XP_047753343
LinkDB
Position
2:complement(3450914..3451772)
AA seq 149 aa
MLPLSLLTAAQNKPMLVELKNGETLNGHLVNCDNFMNITLREVYQTNPDGDRFWKLKECY
IRGSTIKYLRVPDTLLDVVKEEQNRARDMNRSARGGHMGGGELRVVVLQEVVVVDVVDLC
EEEEGAAEALNTFSYCSSVCFLYTLSIAV
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctacccctatcgctgttaaccgctgctcaaaacaagcctatgcttgtcgagctcaag
aacggcgaaactctcaacggtcatctggtcaactgtgataacttcatgaacattacacta
cgagaggtctatcagacaaatccagatggagatagattctggaagttgaaggaatgttat
attcgagggagcacaatcaagtacctacgggtaccggacacgcttttagatgttgtcaag
gaagagcagaacagagctcgtgatatgaatcgatcagctaggggaggacacatgggcgga
ggtgagttgcgggtcgtggtgctccaagaggtggtcgtggtggacgtggtggacctatgc
gaggaggaagagggcgcggcagaggcgcttaatacattttcatactgttcgtctgtttgt
tttctctatactctgtctattgctgtataa

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