Psilocybe cubensis (magic mushroom): JR316_0003703
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Entry
JR316_0003703 CDS
T08288
Name
(RefSeq) Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
JR316_0003703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcub03041
]
JR316_0003703
Enzymes [BR:
pcub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JR316_0003703
Spliceosome [BR:
pcub03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
JR316_0003703
Complex C
U5 SnRNP specific factors
JR316_0003703
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DDX23
ResIII
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-GeneID:
71970024
NCBI-ProteinID:
XP_047751848
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All DBs
Position
3:2713910..2716747
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AA seq
752 aa
AA seq
DB search
MNGHRSEPLSIENLLQKQREEKEAASKPKFLTKEERAKLAIAKRAQEIKEERERNEAARR
DREALEREAEELAQRERNSRYGGGGSSGGRYQDRYQDRDSRDNRDGRGDRGGRKDREAPR
GGRPSAQDDRRTRDGYQNVPTGPRAERAKTSNGSTDVAMSNSMPPPPAPTSDLTNDSESY
VPPMTDNDISAIRSRYLGVDKKKRKIRKMNDRKFVFDWDTQDDTFTDDSPVAVGSNRQGA
QVMFGRGRLAGMDDGGGSGPRKSSSTANGVQLADAMERRNAAKAGYDDRHWTEKPLSEMK
ERDWRIFREDFSISARGGAIPHPLRSWKESTIPEAILECIERIGYKEPSPIQRQAIPIGL
QNRDIIGIAETGSGKTAAFVIPMLAFISNLPPFTDEIRHLGPYALIMAPTRELAQQIESE
ARKFASPLGFRCVSIVGGRAVEEQQFNLREGAEIIIATPGRLKDVIERRVLVLSQCRYVV
MDEADRMVHLGFENDLTFILDALPSETMQGEDQGEQMDVDGETLVKKGRTRVTTLFSATM
PAAVERLARKYLKKPAVITIGEAGRAVDTVEQRVEFVNGEEKKKQKLLEILNSGLYASPI
IVFVNQKKTADMVAKDLSRAGWSAATLHSGKNQEQREASLQSLRSGESDVLVATDLAGRG
IDVQDVSLVINFQMASTIEAYVHRIGRTGRAGKMGVAITFLTNDDDEVMYDLRQEISKSP
VSKVPPELAKHEAAQHKVSREMKRKRDADDLG
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgaacggacatcgttcagaaccgctctcaatagagaaccttcttcaaaaacaaagggag
gaaaaagaggctgcatccaagcctaaattcttgactaaagaggagcgtgctaagcttgca
atagctaagagagctcaggaaatcaaagaggaacgagagaggaatgaagccgctcgtcgg
gaccgcgaagcgctagaacgagaggcggaggagctcgctcagcgcgagaggaacagtagg
tacggtggcggaggaagcagcggcggtcgataccaagatcgatatcaagaccgagatagc
agggataatagagatggtaggggggatcgaggggggaggaaagaccgagaggcgcctcga
ggtggcagaccttcagcgcaagacgacagacgcactcgcgacgggtaccaaaacgtaccc
accgggcctcgcgctgaacgagcaaagacatctaatggctctacagacgttgccatgtcc
aactcgatgcctccgcctccagcgccgacctctgatctcactaacgattccgagtcatac
gtacccccaatgactgacaacgatatttccgctatccggtcccggtatcttggtgttgac
aaaaagaagcggaaaatccgcaaaatgaacgataggaagtttgtctttgactgggatacg
caggatgacacctttaccgacgattcacccgtagccgttggaagcaatcgtcagggtgct
caagtcatgtttggacgaggaaggttggcgggaatggacgatggtgggggtagtggcccg
cggaagagctcgagtacggctaatggtgttcagttggcggatgcaatggaacgcaggaat
gctgccaaagctggatacgacgatagacattggacagagaaacctctttcagagatgaaa
gaacgcgactggcgtatctttagggaggatttcagtatatccgccagaggcggtgctatc
cctcatcctctacgttcttggaaagaatctactattccagaggcaatattggaatgtatt
gagcgtataggttacaaagaaccgtcgcccattcagagacaagccatccctattggactc
cagaaccgcgatatcatcggtatcgccgaaacaggttcgggtaaaactgcagctttcgtt
atccctatgctggctttcatttcaaacctgccgccctttactgacgaaatccgccatctc
ggtccatatgccctgatcatggcaccgacgcgtgaattggcgcagcaaattgaaagcgaa
gcacgcaagtttgcctcacctctaggattcaggtgtgtttctattgttggaggacgcgcg
gtcgaagaacaacaatttaatcttcgagagggtgctgaaatcattattgctacccccggt
cgtttgaaggatgtcatcgagcgccgtgttttagtcttgtcgcaatgtcgatatgtagtg
atggacgaagcggaccgcatggtgcatctcggattcgagaatgacctgacctttatcctt
gatgcgctccctagcgaaacgatgcaaggagaagaccagggagagcaaatggacgtggac
ggagagacgcttgtgaaaaagggacgtactcgtgtgaccacgctgttctcggccacgatg
ccagctgctgtggaacgccttgcgcggaaatatctgaaaaaacctgccgtaattacgatc
ggtgaggcaggacgtgcggtggatacggtcgaacaacgtgtggagtttgtcaacggagaa
gaaaagaagaagcaaaagttgctggaaattctcaacagcgggctgtacgcatcccctatt
atcgtgtttgtcaaccaaaagaagacggcagatatggttgccaaagatctatcccgggca
ggctggagcgctgcaacgctgcattcaggcaaaaatcaagaacagcgagaggcgtcactg
caatcgttgcgcagtggcgaatcggatgttctcgtggctacagatctggcgggacgtggt
atcgatgtgcaggacgttagtttggttatcaatttccagatggcgagcacaattgaagcc
tacgtgcatcgtatcgggcgtactggacgcgctggtaagatgggagtggcgattacgttc
cttacaaacgatgatgatgaagtcatgtacgatttgagacaagaaatttccaagagccca
gtatcgaaagtgccacccgagctggctaaacacgaagcggcgcaacataaagtgtcgcgg
gagatgaagcgcaagcgggatgcggacgatctcggatag
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