Psilocybe cubensis (magic mushroom): JR316_0004873
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Entry
JR316_0004873 CDS
T08288
Name
(RefSeq) RNA helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03013
Nucleocytoplasmic transport
pcub03015
mRNA surveillance pathway
pcub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
JR316_0004873
09122 Translation
03013 Nucleocytoplasmic transport
JR316_0004873
03015 mRNA surveillance pathway
JR316_0004873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcub03019
]
JR316_0004873
03041 Spliceosome [BR:
pcub03041
]
JR316_0004873
03009 Ribosome biogenesis [BR:
pcub03009
]
JR316_0004873
03012 Translation factors [BR:
pcub03012
]
JR316_0004873
Enzymes [BR:
pcub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JR316_0004873
Messenger RNA biogenesis [BR:
pcub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
JR316_0004873
mRNA cycle factors
Stress granule specific factors
JR316_0004873
Spliceosome [BR:
pcub03041
]
Complex C
Other components
EJC/TREX
JR316_0004873
Ribosome biogenesis [BR:
pcub03009
]
Eukaryotic type
90S particles
Helicases
JR316_0004873
Translation factors [BR:
pcub03012
]
Eukaryotic type
Initiation factors
eIF-4
JR316_0004873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
TniB
DUF1871
Motif
Other DBs
NCBI-GeneID:
71971194
NCBI-ProteinID:
XP_047750398
LinkDB
All DBs
Position
4:complement(2141423..2143059)
Genome browser
AA seq
396 aa
AA seq
DB search
MAGINAGDEKLVFESSEAVSVVSTFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPITQG
RDVIAQAQSGTGKTATFSISILQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNV
QCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNK
GFKDQIYDVYRYLPPATQVVLLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKE
RDAIMAEFRGGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKG
VAINFVTVDDVRILRDIEQFYSTQIDEMPVNAAELI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggctggtataaacgcaggcgacgaaaaacttgtgtttgagtcctcagaggctgtttct
gtcgtctcaacattcgacgaccttggtttgaaggaggacctgttacgcggcatctatgcg
tacaacttcgaaaaaccttccgctattcagcagcgggctatcttaccgataacccaagga
cgggatgtcattgctcaggcccagtctggtaccggtaaaactgcaaccttctccatttcc
atcctccaatcaatcgacgtcactgtcagagaaacccaggcccttgtgttgtcgcctact
cgcgaattggcaactcaaattcaatcagttgttctcgctctgggcgactacatgaacgtc
cagtgtcacgcatgcattggaggaacttctattggagaggatattaggaagttggaatat
ggccaacatgtcgtgtcagggacaccagggcgagtttttgacatgattcgtagaagaagt
ttgcgaacccgaaacatcaaaatgctggtgcttgacgaagccgatgaactcctcaataaa
ggtttcaaagaccaaatttacgacgtttaccgataccttcctccagctacccaagtagta
ctcctgagcgcaactctcccctatgatgttttggagatgacaacgaaatttatgaccgat
ccaattcgaatcctcgtcaagcgtgacgaattgacccttgaaggaataaaacagtttttc
gttgcagtcgaaaaagaggactggaaattcgacacactctgtgatctgtacgatactctc
accataactcaagctgtcatcttttgcaatacgcgccgaaaggttgattggttgacggag
aaaatgcgggcctccaattttaccgtctcttctatgcatggtgagatggtacaaaaagaa
agggacgccattatggcagaattccgtggcggaacttctcgggtcttaattacaacagac
gtttgggctcggggcattgatgtacaacaagtctctctggtaatcaactacgaccttccc
gccaaccgagagaactacatacatcgcattggtcgatctggccgctttggaagaaagggt
gtggccatcaacttcgtcactgtcgatgatgtccgcattctgcgtgatatcgaacaattc
tacagcacacaaattgacgaaatgcccgtaaatgcagcggagcttatctga
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