Psilocybe cubensis (magic mushroom): JR316_0008901
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Entry
JR316_0008901 CDS
T08288
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
pcub
Psilocybe cubensis (magic mushroom)
Pathway
pcub03018
RNA degradation
pcub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
JR316_0008901
09123 Folding, sorting and degradation
03018 RNA degradation
JR316_0008901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcub03019
]
JR316_0008901
03041 Spliceosome [BR:
pcub03041
]
JR316_0008901
Messenger RNA biogenesis [BR:
pcub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
JR316_0008901
mRNA degradation factors
5'-3' decay
Lsm complex
JR316_0008901
Spliceosome [BR:
pcub03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
JR316_0008901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Phage_Arf
Motif
Other DBs
NCBI-GeneID:
71975221
NCBI-ProteinID:
XP_047746071
LinkDB
All DBs
Position
8:1252069..1252459
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AA seq
96 aa
AA seq
DB search
MSTLQGYVDRRVLLVLQDGRAIVGVLAGFDQKSNIVLADSKERVYSADEGVEEIPLGLYL
VKGEMICLVGEIDEEIDKSVDLASIRADPIPPIRYG
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccctccagggctatgttgaccgtcgtgtcctcctcgtgctccaagatggacgc
gcaatcgtgggcgtgctggcaggatttgatcaaaaatcaaacatcgtgctagcagactcc
aaggagcgtgtctacagtgccgatgagggtgtggaggagattcctctcggtctatatctc
gtcaaaggagagatgatatgcctcgtgggcgaaattgacgaagaaatcgacaaatcagtc
gatttggcatcgatacgcgcagaccctatcccacctattcgctatggttga
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