Pseudomonas chlororaphis PCL1606: PCL1606_52660
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Entry
PCL1606_52660 CDS
T03768
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCL1606_52660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcz03019
]
PCL1606_52660
03016 Transfer RNA biogenesis [BR:
pcz03016
]
PCL1606_52660
Enzymes [BR:
pcz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PCL1606_52660
Messenger RNA biogenesis [BR:
pcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PCL1606_52660
Transfer RNA biogenesis [BR:
pcz03016
]
Prokaryotic type
tRNA degradation factors
PCL1606_52660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
AKA26711
UniProt:
A0A0D5Y602
LinkDB
All DBs
Position
complement(5712491..5714596)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVKELAAEAAKPTWDWAPAPEA
TALLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtggttggcgccaagcaagccgatccaggcaagggtttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacctcgcgtctgatcgaccgtccgatccgc
cctctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtggtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgcgctggccatc
tccggcattcctttcgacggcccgatcggcgctgcccgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacctacgagcaactggctgcttcgagcctggacatggtcgtg
gccggtaccgaagaagcggtactgatggttgagtcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtgctgtttgcccacgacgaattccaggccgttatcaaggcggtc
aaagagctggctgccgaagcggccaagccgacctgggactgggctcctgctccagaagcc
accgctctgctgggcgccatccgcgccgagttcggcgaagcgatctcccaggcttacacc
atcaccgtcaaggccgaccgttatgcgcgcctgggcgagctgaaagatcaggtcgttgcc
aagctgtccggtgaagaaggccagccttctgccagcgacgtcaaagccgctttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccgcgtatcgacggccgt
gacacccgcaccgtgcgtccgctgaacatcgaagtcggtgttctgccgaagacccacggt
tcggccctgttcacccgtggcgaaacccaggccctggttgtcgcgaccctgggtaccgcc
cgtgacgcgcagctgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggcgccggtcgtcgt
gaaatcggtcacggccgcctggctcgtcgttcggtccaggccatgctgccagccgccgac
gtgttcccgtacaccatccgcgtggtatcggaaatcaccgagtccaacggttccagctcc
atggcttccgtgtgtggcgcttccctggcgctgatggacgctggcgtgccgatgaaggcg
ccggttgccggtatcgccatgggcctggtgaaagaaggcgagaagttcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aagggcgtgaccgcgctgcagatggacatcaagatcaagggcatcaccgaagaaatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggccagatgaaccag
atcatcggccagtcgcgtaccgaactgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccatccgtgcgatc
tgcgaagagaccaaagcttcgatcgatatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagccgcggaagccgcgcgtcagcgcgttctgggcatcaccgcggaagcc
gagatcggcaagatctacgtcggcaaggtcgagcgcatcgtcgacttcggtgcgttcgtc
aacatcctgcctggcaaggacggcctggtgcacatctccatgctgagcgatgctcgcgtc
gagaaagtcaccgacatcctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaagacgtggcagccgccaaggcttcgggc
gtttaa
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