Phoenix dactylifera (date palm): 103702179
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Entry
103702179 CDS
T03274
Name
(RefSeq) probable ATP-dependent DNA helicase RecQ isoform X2
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103702179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103702179
03400 DNA repair and recombination proteins [BR:
pda03400
]
103702179
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103702179
Messenger RNA biogenesis [BR:
pda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
103702179
DNA repair and recombination proteins [BR:
pda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
103702179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103702179
NCBI-ProteinID:
XP_008782729
UniProt:
A0A8B7BPD8
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Position
3:complement(7086292..7109273)
Genome browser
AA seq
907 aa
AA seq
DB search
MELVLKKYFGYSQFRPYQKEIILKILDGQDCLVVMATGSGKSLCYQVPPLVRGKTAIVIS
PLLSLMQDQVMSLKQRGIKADYLGSTQINRAVQSEAESGSFDVLYMTPEKACLLPSRFWI
KLLSVGICLLAVDEAHCISEWGHDFRKEYKQLYTLRGLLPSVPFVALTATATEKVRNDII
CSLNMNDPYIAIGSFDRQNLFYGAKSFSRSQSFLDELVTEVSKYSANAGSTIIYCTTVKD
AEQICESLRNAGIKSGIYHGQMSSKAREESHRSFIRDELQVMVATVAFGMGIDKPNIRCV
IHYGCPKSLETYYQESGRCGRDGLTSICWLYYSRSDFAKVDFYCAEAQSENQRKAIMESF
RAAEKYCMLAACRRKFLLQYFGERNTNDCGNCDNCSGCKRERDLSRESFLLLSCIRSCGG
RWGLNMPIDVLRGSHSRKILDNNFDKLPLHGLGKDYSATWWKALAALLLADDYLKDNIQD
SYRLVSVSLRGLQFLRSASTVHQTPLVLALTSEMIDEEEHGGPQSKVGDLQNLATLESEG
FSEAEAKFYHRLLDIRMKLARDDGTAPYAICGDQAIKKIAKIRPSTKARFANIDGVNQHL
VKKYGDSFLQNISHLSQELNLSLDEGTVLTATAECPNSQRRLAAVTVKEYPNSQKNLAPA
KFGAWQMWQAGLSLQKIANSPGKSAPIKVQTVVGYILEAARERFEINWTRFCEEIGLTPE
IISQIRSAITKIGSRDRLKPIKEELPENVSYEHIKTLLTMEDLGGSAEDITGEISTMVPE
SPSSCDVAKSEVKSSVHEACIRKKASFHSLESMTDPISACKRMENPLHFESFAKKLHTFH
GQEEKQNDDLEVTESAALEWVRNQDGVSLSDVIEHFKGSNKDTVVRLLAYLEGEFLVFKK
NDLYRAM
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggagttagttctcaagaaatactttggatattcccagtttcgaccttatcagaaggag
atcattctgaagatcctagatggacaagattgcttggtggttatggctactggaagcggg
aaatctctctgttatcaggtccctccattggttagaggaaagactgctatcgtcattagc
cctcttctatccttgatgcaggatcaggtcatgagtctaaaacaacggggtatcaaggct
gattatcttggaagtactcaaatcaatcgagctgttcagtctgaagctgaaagtggtagc
tttgatgttctgtacatgaccccagagaaagcctgcttgcttccttcaaggttctggatt
aagttgttgagtgtggggatttgtttgttggctgttgatgaagcacactgcatatcagag
tggggtcatgacttcaggaaggaatacaagcagctgtatacattacgtggccttcttcca
agtgtcccctttgttgccttaactgccacagccacggagaaggtacggaatgacattatc
tgctcattgaacatgaatgacccttacattgctatcggctcatttgaccgtcaaaacctt
ttttacggtgctaaatctttcagtcgatctcagtcatttttggatgagcttgtaacagag
gtttcaaaatacagtgctaatgctggttcaactatcatatattgtacaactgttaaggat
gcagaacagatctgtgagtcattaaggaatgctggaatcaagtctggtatatatcatggt
caaatgagcagtaaagctagggaagagtcccacagatccttcatcagagatgagctccaa
gtaatggttgccactgttgcttttggtatgggtattgataagccaaacataaggtgtgta
attcactatggctgtccgaaaagtctagagacatattatcaggaaagtgggcgttgtggt
agagatggattgacttcaatctgctggttatattattcaagaagtgattttgcaaaagtg
gatttctactgtgcagaagcacaatctgaaaatcaaaggaaagctattatggagtccttt
agggcagcagaaaaatattgcatgctggccgcttgccgcaggaagtttttattgcagtat
tttggtgaaagaaacacaaatgactgcggtaactgtgataattgcagcgggtgtaaaagg
gaaagagacttgtcaagggaatcattcttgttattatcatgtatacgatcttgtggcggt
cgatggggcctcaatatgccaatcgatgttcttcgtggatctcattcaaggaagatactt
gataacaattttgacaagcttccattgcatggtcttgggaaagattattcagccacttgg
tggaaagcacttgctgctctacttcttgctgatgattatttaaaggacaatattcaggat
tcatatagacttgtgagtgtcagcctaagaggattacagtttctccgttctgcaagtact
gtgcatcaaactccactggttttggcactgactagtgagatgattgatgaggaagaacat
ggaggtccacagagtaaagttggagatcttcaaaatcttgctactctagaaagtgaagga
ttctctgaggcagaggcaaagttctaccacaggcttttagatatcagaatgaaacttgcc
agagatgatggaactgctccatatgctatatgtggtgatcaagcaattaaaaagatagcc
aagataaggccatccaccaaagctaggttcgcaaacattgatggtgtgaaccagcacctt
gtgaaaaagtatggtgatagttttcttcagaacatcagtcacttatcacaagaattgaac
ctttcattggatgaaggaacagtactaactgctaccgcagagtgtccaaattctcagaga
agacttgctgctgtcactgtgaaggagtatccgaactctcagaaaaatttagctccagcc
aagtttggtgcatggcaaatgtggcaagctggactttcattgcaaaaaattgctaattcg
cctgggaaatcagctcctataaaagtacagacagttgttggttacatccttgaagctgct
cgtgagaggtttgagatcaattggaccagattttgtgaggaaataggcctaacacctgag
ataatctcacaaattcgttctgccattacaaaaattggatcgagggataggttaaaacca
atcaaggaggaattacctgaaaatgtaagttatgagcacatcaagaccctcttgacaatg
gaagatcttggtggatcagcagaagatattactggtgaaatttcgaccatggtgcctgaa
tcaccatcatcatgtgatgttgccaaatcagaagtgaaaagtagtgtccatgaagcctgc
atcagaaaaaaggcgtcatttcattccctggagagtatgactgatcccatttctgcttgt
aaacggatggagaaccctctacattttgaatcttttgcgaaaaagctacacacattccat
ggacaagaagaaaaacagaatgatgatttagaggtgaccgagagtgctgccttggagtgg
gttagaaaccaagatggggtttcattatcagatgtcatagagcacttcaaaggatcaaac
aaagacactgtggtcaggctgttagcctaccttgaaggtgagtttttggtatttaagaag
aatgatttgtaccgagccatgtaa
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