Phoenix dactylifera (date palm): 103711640
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Entry
103711640 CDS
T03274
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103711640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103711640
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103711640
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103711640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DUF7605
Motif
Other DBs
NCBI-GeneID:
103711640
NCBI-ProteinID:
XP_008796099
UniProt:
A0A8B7CCB2
LinkDB
All DBs
Position
5:complement(4195094..4228781)
Genome browser
AA seq
2442 aa
AA seq
DB search
MLPFSVAVSNQIRLLLQSLNDSNFDSIFCELCQFAEYGSEGTILLVQTCLDQVKLSSEEV
QNLQLERNLVSAIFKFLLDRPYFSTVFSESLKGTLMGEGFLKDLSSTLNLSEAEKVGIGL
ALSDSEIPDLKMRGQNFCVSQIEELCANPSSILSDERIQDIVMFLYQSEGLSKHIDSFTK
IVSLLQLKDSTSFLPTTILTNDISVVNSWRHSDLFSGCYCNDFESVLAEIEKEMNMADVM
TELGYGCTINTSHCKEMLSLFHPLNEVTLSKLLGTIARTHSGLEDAHSTYATFCAAVGSS
SESDSSLLNSWNVDVLVDSIKQLAPETNWTHVMENLDHEGFNIPDEKSFYLLMSIYSKAC
QDPFPLHAVCGSVWKNAEGQLSFLKYAVSAPPDLFTFAHCSRQLTFADSSYLMSKQGNRA
WLCLDLLEVLCQLAERGHVSSVRLMLEQPLAQCPEFLLVGVGHVNTAYNLLQYEVSSTVL
PVILKDSTKNGIIHHLWCVNPNLVLRGFVDAHTDPSNLLRILDICLELKILLPVLDATPF
PFSIKLAAIASQKDQINLEKWLNEHLSVYKDAFCEDCFKFLKEVLSNEANDVPDSSVQQH
RAAILNVYQETCSTFFKVLQAHSGQLISHQLVEEIKRLHVSSNLKIQNAVTTDATTSDGS
SDAIEAEANTYFHQMFSGQLSIDAMVQMLACFKESSDKREQMIFDCMIANLFEEYKFFPE
YPDRQLKIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKSVDSMMFMFGTKALEQFMDR
LVQWPQYCNHILQISHLHGTHAELVSAIERALARTSSSLSESTCGNSLSTDEQQGSGPAS
VESVEASEASWQLMGSASTQLGRQISSLQLQKSSTMSANSKPLLSHTSQSAIVSAHIDSA
ANQKATVSQFLQATNSHHSTGVTTAVSSSSSFVRARSIAPAGMLRQPSYSIGFGAALNIE
TLVAAAERRDTPIEVPVPEVQDKILFMINNISTSNMDAKAKEFSEVLKEQYYPWFAQYMV
MKRASIEPNFHDMYLKFLDKVNSKSLNKELVKATYENCKVLLRSNLIKSSSEERSLLKNL
GSWLGKFTIGRNQALRAKDIDPKVLIMEAYEKGLMIAVIPFTSKILEPCHSSLAYRPPNP
WTMGILSLLAEIYNLPNLKMNLKFEIEVLFKNLGVDMKEVMPTSLLKDRVREVRGNPDFS
NKDVAASRPPVIAEVNSGVMPTLSHVEMQPDVNSTSHPASHPNILAQYTSPHLASNTMVE
YDKAGCLIVPEHVPSGQGLSQVTQSPSPFSLSQLLTIIPNSDSYININPKLSSIGSQLQF
HRIIQAAMDRAIREIVSPVIQRSVTIASRTTKELVLKDYAMESDDGIISRAAHLMVGTLA
GSLAHVTCKEPLRAALSSHLRSLLQTLNITSERMEQIIQILTTDHLDLGCALIENVASEK
AVELIDGEIGPSFAALRKQRETSGSAYYNAGTYAQGPFARVPESLRPKPGRLSLAQQQVY
NDFIKNIWQDQSSQNSSAVSSGPPGLAGSSSNPILPRIYASSSAPLNSNAYLTSQVAPFR
SIADPLDMIAEESDHGSTQLLSSSPSHIGADDNVIQHGGRIDSVAVSFPATATCADLQVE
RSPVTKELGSVVPLSPTTSAADRLGTVLPESMLNTGDVLDKYQQVAQKLEALVAKDDRDT
DIQGIVAEVPDIILRCVSRDEAALAVAQKAFKSLYEDASNGTHVASYLAILAAIRDVCKL
VVKELTSWVIYSDEERKFNIDITIGLIRSELLNLAEYDVHLAKLIDGGRNKVAMEFAMSI
VQALVVQGTVVSTSELYNVMETLTKLALRPGSPESLQQLVEIARNSLNTAPNFTASEKAR
QSRDNKKILSGRFLPNREDYNANDPTVADPAGFRDQVAVLFGDWCQICDLPTTNDSAYSR
YISQLEQSGLLKGDDITDRFFRILMELSVSLCILPEQVSSPGLVSLQSVQQLQQLQQLPY
FSIDSYAKLVALVLKYCSVDQGSSKAILLPRILSVTVRVIQKDAEEKKLSFNPRPYFRLF
INWLLDLASPDPVPDGANFQVLTSFANALHALQPMKVPGWSFAWLELLSHRNFMPKLLMC
NSPKGWPFFQRLLVDLFKFMEPHLRNAELGEPVRFLYKGTLRVLLVLLHDFPEFLCDYHF
SFCDVIPPSCIQMRNVILSAFPRDMRLPDPYTPNLKVGLLAEISQSPRILYDVDSALKAK
QIKAEIDEYLKTRSEGSPSLTELKQRLLLPQNEANLAGTRYNVPLINSLVLYVGMQAIQQ
LQSKSTPQHAPAQQMTHSPPMDIFLVGAAMDIFQSLIKNLDTEGRYLFLNAVANQLRYPN
NHTHYFSFVLLYLFAEANQDIIQEQITRVLLERLIVHGPHPWGLLVTFIELIKNPRYSFW
NRSFARCTPEIEMLFEAASRSCGGPKAMDDGMVSSGISDGNH
NT seq
7329 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttctccgtcgccgtctccaaccagattcgtctccttctgcagagcttgaac
gattccaacttcgattcgatcttttgcgagctgtgtcagtttgcagaatatggaagtgaa
ggcaccattttgttggtccaaacatgcttagatcaagtgaagttaagtagtgaagaggtt
cagaacctgcagctggaacggaatcttgtatctgccatttttaaatttttgctggataga
ccatatttcagcacagtttttagtgaatcattaaaaggtacactgatgggtgaaggcttt
ctaaaagatctttcaagtacattaaatctttcagaagcggagaaagttggcatcggactt
gctctgtctgattcagaaattccagatttgaaaatgagagggcaaaatttctgtgtttct
cagattgaggaactatgtgcaaatccatcttccattctctccgatgagcgaattcaggat
attgttatgtttctttatcagtctgagggcctttccaagcatattgattcttttaccaaa
attgtgtctttattacagctcaaagatagcacttcctttctaccgaccacaattcttaca
aatgatatatctgtggttaactcttggaggcattcagatctattctctggatgctattgt
aatgattttgagtctgttttagcggagatagagaaggaaatgaacatggctgatgttatg
acagaattgggctatgggtgtacaattaacacttcacattgtaaagagatgctctctctt
tttcatcccctcaatgaagtgacactttctaagcttcttggtacaattgctcgtactcat
tctggtctcgaagatgctcatagcacatatgcaacattttgtgcggctgttggtagcagc
tcagaaagtgattcctcattattgaattcatggaatgttgatgtccttgtagattcaatt
aagcaacttgctccagagacaaattggacacatgtcatggaaaacctagatcatgagggc
tttaatattcctgatgaaaaatcattttatcttctaatgtctatatattctaaagcgtgc
caggatccgtttcctctccatgctgtatgtgggtctgtttggaagaatgctgaaggccaa
ttatcttttttaaaatacgctgtgtctgcaccacctgatttatttacatttgcacattgt
tcaagacaactgacatttgctgattcatcatatctgatgagcaaacaaggaaaccgggca
tggctctgtctagatcttttggaggttttatgtcaacttgctgaaagaggccatgtcagt
tcagttcgactgatgcttgaacaacctcttgctcagtgtcctgagttcttactagttgga
gttggtcacgtaaatacggcatataatctcctccagtatgaagtatcttccactgtattg
cctgtgatattaaaagattctacaaagaatggcatcatccatcatctttggtgtgttaat
ccgaaccttgtccttcgaggatttgtagatgcacatactgatcccagtaatcttttaaga
attctggacatttgtctggagctgaagattttattaccagtattagatgcaactccattt
ccgttcagcattaaattggctgcaattgcttctcagaaggaccagataaatcttgagaaa
tggttaaatgaacatttgagtgtatataaagatgctttttgtgaggattgctttaaattc
ttaaaagaagtgctcagtaatgaggcaaatgatgttccagatagttctgttcaacaacac
cgagctgctattctgaatgtttaccaagaaacgtgctctacattcttcaaggttcttcaa
gctcattctgggcagcttatttctcaccaactcgttgaagaaataaagaggctgcatgtt
tcatctaatctaaagattcaaaatgctgtaacaacagatgcaacaacttctgatggaagc
tcagatgctatagaggcagaggcaaacacctacttccatcaaatgttctcaggacagtta
tccattgatgcaatggttcaaatgctcgcatgctttaaagaatcatctgataagagggag
cagatgatatttgattgcatgattgcaaatttatttgaagagtacaagttctttcccgag
tatccagataggcaactaaaaatagctgctgtgctctttggttctattataaagcaccag
cttgtgactcatcttacgcttggtattgctttgcgtggagttcttgatgcattgcgtaaa
tctgttgattcaatgatgtttatgtttggaaccaaggccttggagcagttcatggatcgc
ttggtacaatggccacaatactgcaaccatatattgcagatatcccatttgcatgggact
catgctgaattggtttctgccattgaacgggcacttgcaagaacttcgtccagtctgtca
gagtcaacttgtggtaactctctttctactgatgagcaacaaggttctggaccagcttct
gtagaaagcgtggaggcatctgaggcgtcatggcaattgatgggatcagcctccacgcag
ttggggcggcaaatttcttctttgcagctacaaaaaagctctacaatgtctgctaattca
aaaccccttttatcacatacttcacaatctgcaattgtttctgcacatattgattctgct
gctaatcaaaaggcaactgtttctcaatttttgcaagccacaaattctcatcattccact
ggtgtgacaactgctgtttcatcctcctctagttttgtacgtgctcgaagtattgcacct
gcaggcatgcttcggcaaccttcttacagcataggatttggggctgccttgaacattgaa
acacttgttgcagcagctgaaagaagagacactccaatagaggttcctgtgccagaagtt
caggacaaaatattattcatgataaataacatttcaacttcaaatatggatgctaaagca
aaagaatttagtgaggttctcaaagagcagtactatccttggtttgcacagtatatggtg
atgaagagagcaagcattgaaccaaattttcacgacatgtatttgaagttcctagacaaa
gttaactcaaaatcacttaataaggaacttgttaaagctacttacgagaactgcaaggtg
ttattgagatccaatcttataaagtcaagttcagaagagcgttccttgcttaaaaatctt
ggtagctggcttgggaagttcacaattggtagaaatcaagcattacgagccaaagatata
gatccgaaagttttaataatggaggcatatgaaaagggattgatgattgcggtgattcca
tttacctctaagattctggaaccatgccattccagtttagcgtatcgacctccaaatcca
tggaccatgggcatccttagtttacttgctgagatatataacctgccaaacctcaaaatg
aacttaaaatttgagattgaggttttatttaagaacctgggtgtggacatgaaagaagtt
atgccaacttcacttcttaaagatagagttcgtgaagtgcgggggaatccagatttttca
aacaaggatgtggctgcctcccggccaccagtcattgctgaagttaactcaggcgttatg
ccaacactgagtcatgttgagatgcaacctgatgtcaacagtacatctcatccagcaagc
catccaaatatactggctcagtatacttctccccatcttgcttcaaataccatggtggag
tatgacaaagctggatgtttaatcgtacctgaacatgttccttctggtcagggactaagt
caagttacacaatcaccatcaccattttctctaagccagcttctgacaataattccaaat
tctgattcgtatattaatatcaatcccaaacttagttctatcggttcacagttgcaattt
cacagaattattcaagctgctatggatagggccatcagagaaattgtctctcctgtcatt
cagcgaagtgttacaatagctagtcggacaactaaagaacttgttctaaaggactatgct
atggagtcagatgatggtattatatctcgtgcggcacatttaatggttggcactttagct
ggaagtttagctcatgtcacatgcaaggaacctcttcgtgctgctctatcaagtcacctt
cgaagtctacttcagaccttaaatattactagtgaacgaatggagcagattattcagatt
cttacaaccgatcatctggatcttggctgtgcattgattgaaaatgttgcatcagaaaag
gctgtggagctgattgatggtgagataggtccctcatttgctgcactaaggaaacagagg
gagacatctggctctgcttactataatgccggtacctatgctcaaggtccatttgcgcgt
gtgccagaatcacttcgccctaagcctggacgactgtcccttgcccaacagcaagtctac
aatgactttatcaagaatatatggcaagatcaatctagtcaaaattcaagtgctgtgtct
tctggtccacctggtttggctggtagctcaagcaaccctatcctgcctcgtatttatgct
tcaagttcagccccactgaattccaatgcctacttaacttcacaagtagctccattcaga
tcaatagctgatcccttggatatgattgcagaagaatcagatcatggttcaacacaactt
cttagttcctctccatctcatattggggcagatgataatgttatccaacatggtggccga
attgattccgttgcagtgtcatttcctgctactgctacttgcgctgatctgcaggtggaa
agatcgcctgttaccaaagaactgggatctgtagtaccactatcaccgacgacttctgct
gcagatcgactgggaactgtattacctgaatcaatgttgaatactggagatgtgttggat
aaatatcaacaagttgcacaaaagctggaagccttggttgctaaagatgacagagatact
gatattcagggaattgttgctgaggttccagatatcatactcagatgcgttagccgagat
gaggctgcactggctgttgctcagaaggctttcaaaagtttatatgaggatgcatcaaat
ggtactcatgttgcctcctacctagcaattcttgctgccatacgagatgtttgcaagctt
gttgtcaaagaactaacaagctgggttatatactcagatgaggagcgtaagttcaatata
gacataacaattggtcttattcgatctgagttgctaaatcttgcagagtacgatgtccat
ctggcaaaacttattgatggagggaggaataaagttgctatggagtttgcgatgtccatt
gtccaagcattggttgttcagggaactgtagtcagcacatcagaactgtacaatgtcatg
gaaaccttgacaaagttagcgctgaggccgggttcgccagagtcattgcagcagctagtt
gagattgcccgaaatagtttgaacactgcacccaattttactgctagcgagaaagccagg
cagtctagggataataaaaagatactttctggtcgtttcttgccaaatagagaggattat
aatgctaatgatcctacagtggcagatcctgctggtttccgagatcaggttgctgttctc
tttggtgattggtgtcagatttgtgatcttccaactacaaacgattcggcatatagtcgt
tacatctcacagttggaacaaagtggtctgcttaagggcgatgatatcacagaccggttc
ttccgtattctgatggaactttctgtttcactttgtatactccctgagcaagtcagttct
ccaggcttagtgtcactccagtcagttcagcaattacaacaactccagcagctcccctac
ttttccattgattcatatgcaaagcttgtggcactagttctgaagtactgttcagtggat
caaggatcaagtaaagctattcttctccccaggatcctgtcagttactgtaagagtcatc
caaaaagatgcagaagaaaagaagctgtctttcaacccaaggccatacttcaggctgttt
attaactggcttttggaccttgcttctccagaccctgtccctgacggtgctaactttcag
gtgttgacttcttttgcaaatgctctccatgctttgcaacccatgaaggttcctggttgg
agctttgcatggcttgagttgttgagccacagaaacttcatgccaaaattgctgatgtgc
aattcgcccaagggttggccatttttccagcgtttgcttgttgacttgttcaaatttatg
gagccccacttgagaaatgctgagctgggagaaccagttcgctttctgtacaaaggcaca
ctgcgggtgctgcttgtactgcttcatgatttccctgaatttctctgtgattatcacttc
agtttttgcgatgtgatccctcctagttgcattcaaatgcgcaatgttattctcagtgct
ttccctcgcgatatgaggcttcctgatccttacactcccaacttaaaggttggtcttcta
gctgaaattagccaatccccacgcattttatatgatgttgatagtgctctcaaagctaag
cagattaaggctgagattgatgagtatctcaagacaagatcggaaggatctccctcttta
accgaactgaagcaaagattgctgcttccccaaaatgaggcaaacctggcggggacccgt
tacaatgtacctctgatcaactcacttgtgctttatgttggcatgcaggctatacaacaa
ctgcagagcaagtctactcctcagcatgcacctgcacagcaaatgacccatagccctccg
atggatatttttctagttggggcagctatggatatattccagagcctaataaaaaacttg
gatacagaaggccgctacctctttcttaatgcagttgccaaccaattgcgctacccaaac
aaccatacacattacttctcgtttgtccttctgtacttgtttgcagaggcaaaccaggac
atcatccaggagcagataacacgggtgctgttagagcgcttgatagttcacggtcctcat
ccatggggtctgcttgtcactttcatcgagctgatcaagaatccacggtacagcttctgg
aacaggtcattcgcacgctgtacgccagagattgaaatgctatttgaagcagcgtcaaga
tcttgtggcgggccaaaagctatggacgacggaatggtctctagcggcatctctgatggt
aaccattga
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