Phoenix dactylifera (date palm): 103716554
Help
Entry
103716554 CDS
T03274
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103716554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103716554
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103716554
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103716554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DUF7605
Motif
Other DBs
NCBI-GeneID:
103716554
NCBI-ProteinID:
XP_008802813
UniProt:
A0A8B7CN89
LinkDB
All DBs
Position
2:9648921..9680603
Genome browser
AA seq
2489 aa
AA seq
DB search
MLPFSATVSSQIRLLLQSLNDSNFDSILRELCQLAEYGSEGGILLVQTCLDQVKFNGEEI
QNLQLKRDLVSAIFKFLLDRPNFSTVFSEALKGTSMSEGFLKDLSSALNLSVAEKVGIGL
ALADSEIPDLKIRGQNFCIAQIEELCANPTSIISNERIQDIVMFLYQSEGLSKHVDCFTK
ILSLLQLKDSSFFLPTTMLTNDNSWRYLDLFSGCSGNDFETVLAEIEKEMSMADVMTEVG
YGCTIDTSHCKEMLSLFQPLNDVTLSKLLGAIACTHTGLEDAQNTYATFCAAVGSTSASD
SSLLNSWNVDVLVDSIKQLAPKTNWTSVMENLDHEGFNVPDEKSFYLLMSIYTKACEDPF
PLQAVCGSVWKNAEGQLSFLKYAVAAPPDVFSFAHCSRLLTFAESAYLMKKQGNQAWFCL
DLLEVLCQLAERGHASSVRLMLEHPLTYCPEVLLVGIGHINTAYNLLQYEVSSTVFPVIL
KDSTKIAIIHHLWRVNPNLVLRGFVDTHTDPNNLLKILDICQELKILSPVLDATPFPFSI
KLAAIASRKEHINLEKWLNENLSTYKDAFCEECLKFLKEVLDDGANDATDSSVQQQRAAI
MNVYQETCSTFFKVLQAHPGQLVSHQLFEEIKRLHVSSNPKIQSAVTDAAASDGSSEAIE
AEANTYFHQMFSGQLSIDAMVQMLARFKESSDKREQMIFDCMIANLFEEYKFFPKYPDRQ
LKIAAVLFGSLIKHQLVTHLALGIALRGVLDALRKSVDSKMFMFGTKALEQFMDRLVEWP
QYCNHILQISHLRGTHAELVSVIERALARVSSSQSESNGGNSLPTDQQQGSGPASVESME
ASEASWQLMGSASTQLGQQYSSLQLQQRHQGFLGDRLRGSTTSANYSKPLLSHTSQSAVV
SAPVDSVANQKATVPQSLQTTISHHSTGVTTAVSSSPSFLRARSIAPAGMLRQPSYSTGF
GAALNIETLVAAAERRDTPIEAPAPEVQDKILFMINNISATNTDAKAKEFSEVLKEQYYP
WFAQYMVMKRASIEPNFHDLYLKFLDKVNSKLLNKEIVKATYENCKVLLRSDLIKSSSEE
RSLLKNLGSWLGKFTIGRNQALRAKEIDPKVLIIQAYEKGLMIAVIPFTSKILEPCQSSL
AYQPPNPWTMGILSLLAEIYNLPNLKMNLKFDIEVLFKNLGVDMKEVKPTSLLKDRVREV
EGNPDFSNKDVTISQPPVIAEANTGIMQTLNHVEMQPDVNSASHPASHPNVLAQYTSPVH
LASNTMGEDDKVGGLMVPERVPSGQGLSQVTPSPSPFSLSQVFCLFHFTCFILHRLILLS
VFNFHVYDIFFYLCFSQLLTIIPNSDSYININPKLSSMGSQLQFHRIIQVAMDRAIREIV
SPVIQRSVTIASRTTKELVLKDYAMESDDGIISRAAHLMVGTLAGSLAHVTCKEPLRVAL
SSHLRSLLQAINITSERTEQIVQILTTDHLDLGCAVIENVASEKAVELIDGEIAPSFAAL
RKQRDAAGSAYYDAGTYAQGPFARLPEALRPKPGRLSLAQQRVYDDFIKNIWQNQSGQNS
SAVPSGPPAMASSSSNSTLPRVYASSSASLNSGALSTSQVAPFSSVAQPLDLIAEESDRG
SAQLLSASPTHVGVNDIVIQSGEANSVAASFPAAASSSDLHMVETSTVTKELGSAVPPSP
TSSAADRLGTVLPESMLTAGDALDKYQQVAQKLEALIAKDAKDARDTDIQGIVAEVPDII
LRCVSRDEAALAVAQKAFKSLYENASNGTHVASYLAILAAIRDVCKLVVKELTSWVIYSD
EERKFNKEITIGLIRSELLNLAEYNVHLAKLIDAGRNKAATEFAISLVQTLVVQEPGVSA
SELYNVIEVLSKLATRPGSPESLQQLVEIARNNMNAAPNFTASEKARQSRDNKKVLSGRS
LTNREEYNANDPIVADPAGFRDQVAVLFSDWCRICELPATNDSVYSHYISQLQQSGLLKG
DDITDRFFRILMELSVSHCVLPEQVSAPGSLSLQSAQQLQQVQQLSYFSIDSYAKLVVLI
MKFCSVDQGSSKAILLPKILSVTVRVIQKDAEEKKLSFNPRPYFRLFVNWLLDLASLDPV
VDSANFQVLTSFANAFHALQPLKVPGWSFAWLELVSHRSFMPKLLMCNSPKGWPFFQRLL
VDLFKFMEPYLRNAELGEPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQM
RNVILSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSDVDGALKAKQIKAEIDEYLKTR
PEGSPFLTELKQRFLLPQSEANLAGTRYNVPLINSLVLYVGMQAIQQLQSKSSSQHAPAQ
QITHGPPMDIFLVGAAMDIFQSLIKNLDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYL
FAEASQDIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFTRCAPEIEK
LFESVSRSCGGPKAVDDGIVSSGIPDGNH
NT seq
7470 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttctccgccaccgtctccagccagatccgtctcctgcttcagagcttgaac
gattccaacttcgattcgatcttgcgcgagctctgtcagcttgcagaatatggaagcgaa
ggtggcattttgttggttcaaacttgtttagaccaggtgaaattcaatggtgaagagatt
cagaacctgcagctgaaacgggatcttgtatctgccatttttaagtttttgcttgataga
ccaaatttcagcacagtttttagtgaagcattaaaaggtacatcaatgagtgaaggtttt
ctaaaagatctttcaagtgcattaaatctttcagtagcggagaaagttggcattggactt
gctctggctgattctgaaattccagatttgaaaattagagggcaaaatttctgcattgct
cagattgaggaactatgtgcaaatcctacctccattatatctaatgagcgaattcaggat
attgttatgtttctctatcagtccgagggtctttcaaagcatgtagattgttttaccaaa
atcttatctttattacagctcaaagacagctctttctttctgccaaccacaatgcttaca
aatgacaactcttggaggtatttggatctattctctggatgctctggcaatgattttgag
actgttttagcggagatagagaaggaaatgagcatggctgatgttatgacagaagtgggc
tatggttgtacaattgacacttcacattgcaaagagatgctctctctttttcaacccctc
aatgatgtgacactttctaagctacttggcgcaattgcttgtactcatactggtcttgaa
gatgcccagaacacatacgcaacattctgcgcagctgttggtagcacctcagcaagtgat
tcttcattgttgaattcatggaatgttgatgtccttgtagattcgattaagcaacttgct
ccaaaaacaaattggacaagtgtcatggaaaacctagatcacgagggctttaatgttcct
gatgagaaatcattttatcttttaatgtctatatacactaaagcatgtgaggatccattt
cctctccaagctgtatgcgggtctgtctggaagaatgctgaaggccaattatctttttta
aaatatgctgtggcggcaccacctgatgtattttcatttgcgcattgttcaagactattg
acatttgctgagtcagcatatctgatgaagaaacaaggaaatcaggcatggttttgtcta
gatcttttggaggttttatgtcaacttgccgaaagaggccatgctagttcagttcgactg
atgcttgaacaccctctaacttactgtccagaggttttacttgttggaattggtcacata
aatactgcatataatctcctccagtatgaagtatcttccactgtatttcctgtgatatta
aaagattctacaaagattgccatcatccatcatctctggcgtgttaatccgaatcttgtc
cttcgaggatttgtagacacacatactgatcccaataatctactaaaaattctggacatt
tgtcaggaattgaagattttgtcgccagtattggatgcaaccccatttccattcagcatt
aaattggctgcaattgcttctcggaaggagcacataaatcttgagaaatggttaaatgag
aatttgagtacatataaagatgctttctgtgaggagtgccttaagttcttaaaagaagta
cttgatgatggggcaaatgatgctacggatagttctgttcaacaacaacgtgctgctatt
atgaatgtttaccaagaaacatgctctacattcttcaaggttcttcaagcccatcctggg
cagcttgtttctcaccaactttttgaagaaataaagaggctgcatgtttcatctaaccca
aagattcagagtgctgtaacagatgcagcagcttctgatggaagctcagaagctatagag
gcagaggcaaacacttacttccatcaaatgttctcaggacagttgtccattgatgcaatg
gttcaaatgcttgcacgttttaaagaatcatctgataagagggagcagatgatatttgat
tgcatgattgcaaatttatttgaagagtacaagttcttccccaagtatccagataggcaa
ctaaaaatagctgctgtgctttttggttctcttataaagcatcaacttgtcactcatctc
gcacttggtattgctttgcgtggagttcttgatgcattgcgtaaatctgttgattcaaag
atgtttatgtttggtaccaaggccttggagcagttcatggatcgtttggtagaatggcca
caatactgcaaccatatattacagatatctcatttgcgtggaacacatgctgaattggtt
tctgtcattgaacgggcacttgcaagagtttcgtccagtcagtcagagtcaaatggtggt
aactctctgcctactgatcagcaacaaggttctggaccagcttctgtagaaagcatggag
gcgtctgaggcatcatggcaattgatgggatcagcctccacgcagttggggcagcaatat
tcttctttgcagctgcaacagagacatcagggatttctcggtgacaggcttagaggctct
acaacatctgctaattattcaaagccccttttatcacatacttcacaatctgcagttgtt
tctgcacctgttgattctgttgctaatcagaaggcaactgttccccaatctttgcaaacc
acaatttcccatcattccactggagtgacaactgctgtttcatcgtctcctagttttcta
cgcgctcgaagtattgcgcctgcaggcatgcttcggcaaccttcttacagcacaggattt
ggggctgccttgaacattgaaacacttgttgcagcagctgaaagaagagacactccaata
gaggctcctgcaccagaagttcaagacaaaatattattcatgataaataacatttcagct
acaaatacagatgctaaagcaaaggaattcagtgaggttctcaaagagcagtactatccc
tggtttgcacagtatatggtcatgaaaagagcaagcattgaaccaaattttcatgacttg
tatttgaagttcttagacaaagttaactcaaaattacttaataaggaaatcgttaaagct
acttatgagaactgcaaggtgctgttgagatcggatcttataaaatcaagttcagaagaa
cgttccttgcttaaaaatcttggtagctggctcgggaagttcacaattggtaggaatcaa
gcgttacgagccaaagaaatagatccaaaagttttaataatacaggcatatgaaaaggga
ttgatgattgctgtgattccatttacctctaagattctggaaccatgccagtccagttta
gcatatcaacctccaaatccatggactatgggcattcttagtttacttgctgagatatat
aacctgccaaacctcaaaatgaacttaaaatttgacattgaggttttatttaagaacctg
ggtgtggacatgaaagaagttaaaccaacttcacttcttaaagatagggttcgtgaagtg
gaggggaatccagatttttcaaacaaggatgtgactatatcccagccaccagtcattgct
gaagctaacacaggaattatgcaaacattgaatcatgttgagatgcaacctgatgtcaac
agtgcatctcatccagcaagtcatccaaatgtattggctcagtatacgtctcctgtccat
cttgcttcaaataccatgggggaggatgacaaagttggaggtctaatggtacctgaacgt
gttccgtctggtcagggactaagtcaagttacaccatcaccatcaccattttctctaagt
caggttttttgtttattccacttcacttgtttcattcttcatagattaattcttttatca
gtatttaatttccatgtttatgatatatttttttatctatgtttttcacagcttctgaca
ataattccaaattctgattcttatattaatatcaatcccaagcttagttccatgggttca
cagttgcaattccacagaattattcaagtcgctatggatagggccatcagagaaattgtc
tctcctgtcattcagcgcagtgttacaattgctagtcggacaactaaagaacttgtttta
aaggactatgctatggagtcagatgatggtattatatctcgggcagcacatttaatggtt
ggcactttagctggaagtttagctcatgtcacttgcaaggaacctcttcgtgtagctctg
tcaagtcaccttcgaagtctacttcaggccataaatattactagtgaacgtacggagcag
attgttcagattcttacaaccgatcatctagatcttggctgtgcagtgatcgaaaatgtt
gcatcagagaaggcagtggagttgattgatggtgagatagctccctcatttgctgcatta
agaaaacagagggacgcagctggctctgcctactatgatgctggtacctacgctcaaggt
ccatttgcacgtctgccagaggcacttcgccctaagcctggtcgactatcccttgcccaa
cagcgagtctacgatgactttatcaagaatatatggcaaaatcaatctggtcagaattca
agtgctgtgccttctggtccacctgctatggctagtagctcaagtaactctaccctgcct
cgtgtttatgcttcgagttcagcctcgttgaattctggtgccttatcaacttcacaagta
gctccgttcagctcggtagcccagcccttggatctgattgcagaagaatcagatcgtggt
tcagcacaactacttagtgcctctccaactcatgtcggggtgaatgatattgttatccaa
agtggtgaagccaattctgttgcggcatcatttcctgctgctgctagttcctctgatctg
catatggtagaaacatcaactgttaccaaagaactgggatctgcagtaccaccatcaccc
acaagttctgctgcagatcgactgggaactgtattacctgaatcaatgttgactgctgga
gatgcattggataaatatcaacaagttgcacaaaagctggaagccttgattgctaaagat
gccaaagatgccagagatactgatattcagggaattgttgctgaggttccggatattata
ctcagatgtgtaagccgagatgaggctgcattggctgttgctcagaaggctttcaaaagt
ttatatgagaatgcatcaaatggtacccatgttgcctcctacctagctattcttgctgcc
atacgagatgtttgcaagcttgttgtcaaagaactgacgagctgggtcatatattcggat
gaggagcggaaattcaataaagaaataacaattggtcttattcggtctgagttgctaaat
cttgctgagtacaacgtccacctggcaaaacttattgatgcggggaggaataaagctgct
acagaatttgccatatccctagtccaaacattggtcgttcaggaacctggagtcagtgcg
tcagaactgtacaatgtcattgaagtcttgtcaaaattagcgacgaggccagggtcacca
gagtcattgcaacagctagttgagattgcccggaataatatgaacgctgcacctaacttt
actgccagcgagaaggccaggcagtcgagggataataagaaggtactttctggtcgctcc
ttgacaaacagagaggaatataatgctaatgatcctatagtagcagatcctgctggcttt
cgagatcaggttgctgttctctttagtgattggtgtcggatttgtgagcttccagctaca
aatgattcagtgtatagtcattacatatcacagttgcaacaaagtggtttgcttaagggt
gacgatatcacagaccggttcttccgtattctgatggagctttctgtttcacattgtgta
cttcctgagcaagtcagtgctccaggctcattgtcacttcagtcagctcagcaactccaa
caagtccagcaactctcctacttttccattgattcatatgcaaagcttgtggtcctaata
atgaagttctgttcagtggatcaaggatccagtaaagctattcttctcccgaagatccta
tctgttactgtaagagtcatccaaaaagatgcagaggaaaagaagctgtctttcaacccc
aggccatacttcaggttgtttgttaactggcttttggaccttgcttctctagatcctgtc
gttgacagtgccaactttcaggtgttgacatcttttgcaaatgctttccatgctttgcaa
cccttgaaggttcctggttggagctttgcatggctggagttggtgagccatagaagcttc
atgccaaaattgctgatgtgcaactcgcctaagggttggccatttttccagcgtttgctt
gttgacttgttcaaatttatggagccttacttgagaaatgctgagctaggagaaccggtc
cattttctgtacaaaggcactctaagggtgctgcttgtactgcttcatgattttcccgag
ttcctatgtgactatcacttcagtttctgtgatgtgatccctcccagttgcattcaaatg
cggaatgttattctcagtgcattccctcgcaatatgaggcttcctgatccttccactccc
aacttaaagatcgatctgctagctgaaattagccaatccccacgtattctatctgacgtt
gatggtgctctaaaagccaagcagattaaggccgagattgatgagtatctcaagacaagg
ccagaaggatctccctttttgaccgaattgaagcaaagatttctgcttccccaaagtgag
gcgaacctggcggggacccgttacaatgtgcctctgatcaactcacttgtgctttatgtt
ggcatgcaggctatacaacaactgcagagcaagtccagttcgcagcatgcacctgcgcaa
cagataactcatggccctcctatggatatttttctagttggagcggctatggatatattc
cagagcctaataaagaacttggatacagaaggtcgctacctctttcttaatgcagttgcc
aaccaattgcgctacccaaacaaccatacacattacttctcatttgtccttctgtactta
tttgcagaggcaagccaggacatcatccaggagcagataacacgggtgctgttagagcgc
ttgatagttaaccgccctcatccatggggtctgcttatcactttcattgagctaatcaag
aatcctcggtacaacttctggaaccggtcgttcacgcgttgcgcgccagagattgaaaag
ctttttgaatcagtttcaagatcttgtggtgggccgaaagctgtggacgatggtatagtc
tccagtggcattcccgatggcaaccactga
DBGET
integrated database retrieval system
