Paramisgurnus dabryanus (large-scale loach): 135719062
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Entry
135719062 CDS
T10799
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04510
Focal adhesion
pdab04512
ECM-receptor interaction
pdab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135719062 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135719062 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135719062 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pdab00535
]
135719062 (col9a1a)
Proteoglycans [BR:
pdab00535
]
Extracellular matrix (ECM) proteoglycans
Others
135719062 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135719062
NCBI-ProteinID:
XP_065097678
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Position
14:complement(22793447..22807282)
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AA seq
684 aa
AA seq
DB search
MGTVRASLLGILLQLVLICSAQRGPPGPRGPPGPLGLPGFSGVDGIDGERGPGPGPDGPP
GPVGEKGRDGLNGLPGKPGADGLTGPRGEPGPLGPPGQKGEPGEPGARGPPGVGEDGEAG
ADGEDGLPGELGKVGPPGSQGPRGPIGRRGLPGPRGPPGVWDGKELCPNACTTGLTGHPG
LAGMKGHKGVKGESGEPGRQGHKGEEGDQGGPGEPGASGPPGKQGLIGITGMMGPKGDKG
VRGNVGDVGPQGIQGAPGDRGQRGKVGENGPKGAEGPLGMQGLSGLPGPKGETGLPGVDG
RDGIPGLPAVKGLPGKVGSPGEAGLQGLPGLPGIPGAKGHMGGKGNTGGPGVAGLIGNNG
KTGERGEQGEVGPVGPRGGPGERGNKGPDGPAGMPGARGNKGDQGLPGVPGPAGFSGQKG
DRGAVGLTSPKGEQGPPGEEGITGEKGDLGDEGEPGEKGSTGKLGDTGNKGPEGGRGQPG
PLGQPGGPGPRGMQGDRGAPGLPGGQGRRGRGPTDDHIKDVCRRVLQTHFAQMAASLKRP
ESGIPGLTGPPGPPGPPGPAGNNGFPGHPGNRGLPGLKGPPGLLGRKGPKGDQGDRGDRG
PTLQGPKGIPGPPGLPGNPGSPAYGKDGRDGLRGPVGVPGNPGVPGPPGPPGLNGYCESS
QCIPQEIPGPTAIKDSNMKGPESL
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggggactgtacgcgcatctctgctggggattttactgcagttagtcctgatctgctct
gcacagaggggaccgccgggtccaagagggccacctggaccgctagggcttcctggattt
tctggtgttgatggcattgatggtgagaggggtcctggtcctggcccagatggcccccca
ggccctgttggggagaaaggcagggacggattaaatggccttccaggaaaaccaggagca
gacggtttgactgggccacgtggtgaacctggtcctcttggtccccctggacagaaaggt
gaacctggtgaacccggagcaaggggaccccctggggttggagaggatggtgaagctggt
gctgatggggaggatggattacctggagaacttggaaaagttgggcctcctggaagccag
gggccgagaggtcctatcggcagaaggggactgcctgggcccagaggtcctcctggagtc
tgggatggtaaggaattgtgtccaaatgcctgtactactggtttgactggccacccaggc
cttgcaggcatgaagggccacaaaggggttaaaggtgaatcaggtgaaccaggaaggcaa
ggacataagggagaggaaggagatcaaggaggacctggagagccaggcgcgtctggacca
cctggtaaacagggtctcataggaatcacagggatgatgggccctaaaggtgataagggg
gttcgtgggaatgttggcgacgtgggtcctcagggtatacagggcgcccctggtgatcgc
ggacaaagaggaaaagtaggtgagaatgggccaaaaggtgctgagggacctctgggaatg
cagggactgagtggtttaccaggaccaaaaggagaaactggtttgcctggtgtggatggt
cgtgatggtattccaggactgcctgcagtaaagggtcttcctgggaaagttggctcacct
ggtgaagctggacttcaaggacttccaggtttaccaggtattccaggagcaaaaggccat
atggggggaaaaggaaatactggtggtccaggtgtggcaggtctaattggaaacaatgga
aaaactggtgagcgtggtgagcagggagaggtgggaccagtcggaccaagaggtgggcca
ggtgagcgaggaaataagggtcctgatgggcctgctggcatgccaggagcaaggggaaat
aaaggagatcaaggtcttcccggtgttccagggcctgctggcttttctgggcaaaaagga
gataggggtgctgttggtctcactagtccaaaaggcgagcaagggccacctggtgaagag
ggtataacaggagaaaagggagatttaggtgatgagggagagccgggagaaaaaggatcg
acaggaaagcttggagatacaggaaataaaggaccagagggtgggcgtggccagcctgga
cccctgggccaacctggaggacctggaccaagaggcatgcaaggagaccgcggagcacct
ggattaccagggggacagggacgacgaggacgaggacccacagatgatcacatcaaggat
gtctgcaggagggttttgcaaactcactttgctcagatggcggccagtctgaagaggccc
gaatctggcatccctgggttgacaggtcctccgggtcctcctggacctccagggcccgct
ggaaataatggcttccctgggcatcctgggaacagaggactgccaggtctcaaagggcca
ccaggtcttttgggaagaaaaggacccaaaggtgaccaaggtgacaggggagataggggt
cccacattgcagggacccaaaggtatacctggaccaccagggctcccaggtaaccctggt
agcccggcatacggtaaagatgggcgtgatggcctacgaggaccggtaggtgttcctgga
aatccaggcgttcctgggccacctggtcctcctggactcaacggatactgcgaatcatct
cagtgcatccctcaagaaattccagggccaacggcaataaaggactccaacatgaaggga
ccagagagtctatga
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