Paramisgurnus dabryanus (large-scale loach): 135774474
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Entry
135774474 CDS
T10799
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135774474 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135774474 (skic3)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
135774474 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_17
TPR_19
TPR_16
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
PPTA
TPR_6
ANAPC8
T7SS_EccA1_N
TPR_15
ARM_TT21_C
DUF6557
TPR_MalT
Gag_FV_central
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
135774474
NCBI-ProteinID:
XP_065140675
LinkDB
All DBs
Position
5:48882527..49153698
Genome browser
AA seq
1567 aa
AA seq
DB search
MSRKEVKTELKRARDAIKNKEFKEALKHCKDVLKLDKNNYNAWVFIGVAASELQQPDQAL
AAYRKATEIEPEQLLAWQGLANLYDKSNQADFKAELSKVYQTLSTLYEMSDKTKWLEVSK
KLVEIYQSEKNYLQVARVFQKLIQVKEGEEGVQTLELLELWMEMTRVLQSTVEDQDNETQ
QHLILAFQRSLELTVDVPSEAHRSLSENYIKCLSKLPHEVAKLKVICEGTLLLYPTYFYP
LEALCEHYIKTGDCSEEAFHCFSRLSELDPGNSVAHFGLGVKALLEKKYEDAIRNISLGL
KQRCCSIIGLYNLSQAQLKMHRYSDSIKSSSQGLKLSVGKCDDWTRKLQRLKLEALVRTG
RGQDADEALQILAQISNVRNDPVLLALQGRALLQKDYCEEAFQVSVELRSSHPGFVEGLT
LKGLIHVAQNEHNQAEESFLEALSRNPENGEIYFLLGQLYWNMREETQRDRKRSYTHLLK
AAKLDPYLCSVFRFLGHYYRDVEKDQDRAIGCYRRAFELDSSDEESGAAAVDLSMEQGDM
EGALTILQSVTETASPGSDKWAWLRRGLIHLKIGQHQPAIADLQAALKADPQDWVCWECL
GEAYLNRRSFTAALKTFAKAHVLQPTSIYSLYKTASIKQILGQFRDATVAYQQILKQEDY
VPALKGLGECLLALAKSALEDCLDGRAIYLIQNSIHYLFRAVQQRPDLSCLWKLLGDACT
STRTVSPNQAKVLVPGALCGMHPLDQSFTLGHRQLLTLGERCFGRALKLIPKAPSLWCDL
GLNYYHQSRLLSSLPGEDSQSLLEKALQCLKKAVMLDSANHTYWNTLGVVALTKGIENFA
LAQHCFIKSVTAEPNNVVAWSNLGALYLKKGNIEFSHEAFKIAQSLEPLYVNCWIGQAII
AETVGSYDTMDLFRHTTELSTHTEGVKAYAYWVCSTLLDKSNRDSGLYLYNIVQMNAVLA
AQVALSKYTERIQVDPDAFIMLGYLNTHLQLKNQATESHHRAVELLQGLPYTEKLSFALR
CYGCALSNNGQYEEAMHIYSSTPMEVLHDVIGLALACFRTGRLPESILAYEKALAVASTE
REKAYIYSALALIQHRLDSLVNAKTLLFKCSMLKVPVPESLQSLCALGLVHGDLTLASAT
LAELLKMGEPIGGAVEECCLLICTLLALQGKYNGVHREAARAIHRNPGNSSLWALLSRLV
PQYCPNKADGGAVAGRVASHASLTLGKRALLYSGVNHLASGRHSIKDRRQNALKTIQRAV
LLCPEDPAGWAGLMAACHTENTVSLLRGSTPHREGLERALMTLVSEKVKGLQEDDGLLAQ
ALEGWALQQAVTGFKQSGQYDQAEALCSQVLSVSPEHPVVFLMLRQVQCEHLLLSVTGNC
IPPAVMNQLSAAVMTNHTSVFAWHWLAVVYLSQGLLTQASMVYRQSLQLASQLGDYNGKI
SSLLRLALLALIPCMAGVCVSEWQDLVLEACTEVLKITSSPVTLLFQALLQFCVKLGGRE
TRRLLERIVYDSPSGTSDTVLSVARWYLLRHLHTKDDLEQIDTLLMVGLEAGDSRLLDFH
RRLHPSS
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaaagaagtaaaaactgagctaaaacgtgcaagagacgcaattaaaaataag
gagtttaaagaagctctaaagcattgtaaggatgttctcaagcttgataagaataactac
aatgcatgggtgttcattggagtggcggcctcagagctgcagcagcctgatcaagccctg
gcagcctacagaaaagcaactgaaatcgagccagaacaactgctggcatggcagggttta
gcaaatctgtatgataaaagcaaccaagcagatttcaaagctgagctgtcaaaggtttat
cagacgcttagcacattgtatgaaatgtcagacaaaacaaagtggttggaagtcagcaag
aaactggtggaaatttatcagtcagaaaagaattatttacaggtggccagagtctttcag
aagttaatacaagtaaaggagggtgaagagggagtgcagactttagagctgctggaactt
tggatggagatgaccagagtgctgcaaagcaccgtggaggatcaggacaatgagactcag
cagcatttgatattagcatttcagagatctttggaactgactgtagatgtacccagtgaa
gcccacaggagcctgtcagagaattacattaaatgtctttctaagcttccacatgaggtt
gccaagctaaaagtaatatgtgaaggcacactgcttctctatccaacctacttctaccct
ctagaggccctctgtgagcactacatcaaaacaggtgactgtagtgaggaagcttttcac
tgcttcagccgtctctcagagttagatccaggcaactcagttgctcactttggccttggt
gttaaagctctgctggaaaaaaaatatgaggatgccatcagaaatattagtttgggactg
aaacaaaggtgctgttccatcatcgggttgtataatctatcccaggctcagctaaaaatg
catagatactctgacagtatcaaatcttccagtcaagggctaaagttgagtgttggtaaa
tgtgatgattggacaaggaaactacaaaggttgaagttagaggctttggtaaggactgga
agaggacaggatgctgatgaagcactgcagatacttgcacagatttcaaatgtcagaaat
gacccagtgcttttagctttacaaggacgagctcttctgcaaaaagattattgtgaggaa
gcatttcaggtttctgtggagctgcgaagctctcacccaggatttgtggagggtctcacg
cttaaaggactaattcatgttgcacaaaacgaacacaatcaggctgaggagagctttctg
gaggctttatccagaaacccagagaacggggagatttacttcctgttgggacaactgtac
tggaacatgagagaggagactcagagggaccgtaaaagatcctacacacatttactgaag
gctgctaaactggacccctatctttgttcagtgttccgttttcttggccattactacagg
gatgttgaaaaagatcaggacagggccataggctgctataggagagcttttgagttggat
tcctctgatgaagagtctggagctgctgctgtggacttgagcatggaacagggagacatg
gaaggggccctgacaattctgcagtcagtgactgagacagccagtcctggctctgataaa
tgggcctggttaagaagaggtctcattcacctgaagattggccagcaccaaccggcaatt
gcagatctccaggcagcattgaaggctgatcctcaggactgggtgtgctgggagtgttta
ggtgaagcttatctgaatcgcaggagtttcacagctgctctaaagacttttgccaaagca
catgtcctgcagcccacctccatctacagcctctacaagactgcctccatcaaacagatc
ctgggacagtttagagatgccactgtggcgtaccagcagattttgaagcaggaggactat
gtgccagcacttaaaggtctgggtgaatgtttgttagccttagctaaaagtgcattggaa
gactgtctagatggcagagcaatatacctgatacagaactccatccattacctttttaga
gcagtccaacagaggccggacttgtcctgtctgtggaaactacttggtgatgcctgtacc
agcactagaactgtgtctccaaaccaagctaaagttttggtacctggggctctgtgcgga
atgcatccactggatcaaagcttcacactgggtcatcgacagctcctcactttaggggaa
aggtgctttgggcgtgctttgaaactgataccaaaggcacccagtctgtggtgtgacctt
ggcctaaactactaccaccaatccagactgctcagctctctacccggggaggactctcag
tccttgctggagaaagccctacagtgtttgaagaaggcagtcatgttggacagtgccaat
cacacatactggaacactcttggagtggtagccttgacaaagggaattgaaaactttgct
cttgcacaacactgttttatcaagtctgttacagctgagccaaataatgtggttgcatgg
tcaaaccttggtgctttatatttgaaaaagggaaatattgagttctctcatgaagctttc
aagattgcacagtctctcgaacctctgtatgtgaactgttggattggtcaggcgattatt
gctgaaacagttggaagttacgacactatggaccttttcagacacaccacagaactgagc
actcatactgagggtgtgaaggcttatgcatactgggtttgttccacactgctggacaaa
agcaacagagactcaggactttacctctacaacatagtccagatgaacgctgtcttagct
gctcaggtggctctgagcaagtacaccgagagaattcaggtggaccctgatgccttcatc
atgcttggatacctgaacacacacctgcagctaaagaatcaggccactgaatcacatcac
agagctgtagaactgcttcagggactcccttacacagaaaagctcagttttgccctgagg
tgttatggatgtgccctcagcaataatggccagtatgaagaagcaatgcatatttattcc
tccacaccaatggaggtgctgcacgatgtcatcgggctagcactcgcttgctttagaact
ggtcgcctgccagagagcattttggcgtatgaaaaagcccttgcagtggcttctacagag
agggaaaaggcgtatatatacagcgcacttgctttgatacagcatcgactggatagcctg
gttaatgccaaaactttgctctttaagtgctcaatgctgaaagtgcctgtcccagagagc
ctgcagagtctgtgtgctcttggtttagttcatggggacctaaccctggcaagtgctaca
cttgctgagttgttaaagatgggagaacctattggtggtgctgtagaggaatgctgtctg
ctcatctgcaccctgctggccttgcaaggcaaatataatggagtacacagagaggctgct
agggctattcacaggaacccaggaaattcatcgctctgggctcttctctccagactggtt
ccacagtactgtcccaacaaggctgatggcggtgctgtggctggccgtgtggcatctcat
gccagcttgactcttggaaagagggcattgctgtacagtggagtaaatcacttggcttcc
ggccgtcactccataaaggacagaagacagaatgctctgaaaacaattcaaagagctgtg
ctgctgtgtccagaggatcctgctggatgggcgggactgatggctgcctgccacacagaa
aatactgtctccctactcagaggctccacacctcacagagagggtcttgagagggcactt
atgactctggtgtctgagaaagtgaagggcctgcaagaagatgacggactccttgctcag
gcactggagggttgggcgctacagcaggctgtgactggattcaaacagagtggccaatat
gaccaggcagaggctctatgttctcaggtgctgagtgtatcaccagagcatcctgtggtg
tttctgatgttgaggcaggttcagtgtgagcatttgctactgtcagtgactggtaactgc
attccgcctgcagtaatgaatcagctgagtgctgctgtcatgaccaaccatacctctgtg
ttcgcctggcattggctggcagtagtgtacctctctcagggtctgctgactcaggcttct
atggtttacagacagagtcttcagctcgcctctcagctgggtgattacaatggaaagata
agcagtctgctcagactggccctgcttgcacttatcccatgtatggctggagtatgtgtc
tctgagtggcaggatctggtgttggaagcatgcactgaagtcttaaagatcaccagctct
ccagtgactctgctctttcaggccttactgcaattctgtgtcaagttgggtggaagggaa
acccggcgtttgctggagaggattgtgtatgattcaccctcagggacttctgatactgtg
ttatcagtggcacgctggtacctcctgcgccacttgcacacgaaagatgacctggagcag
atagatactctgctgatggtcggtttagaagcaggggacagcagactgctggatttccac
agacgccttcacccatctagctaa
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integrated database retrieval system
