Paramisgurnus dabryanus (large-scale loach): 135775863
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Entry
135775863 CDS
T10799
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04510
Focal adhesion
pdab04512
ECM-receptor interaction
pdab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135775863 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135775863 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135775863 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pdab00535
]
135775863 (col9a3)
Proteoglycans [BR:
pdab00535
]
Extracellular matrix (ECM) proteoglycans
Others
135775863 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135775863
NCBI-ProteinID:
XP_065142487
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Position
21:complement(26061769..26086339)
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AA seq
678 aa
AA seq
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MAVLSALQLLVLCQLLASSFAQRPGLRGESGVPGPPGPPGKDGIDGKPGPPGLPGKPGPK
GKAGTPGAAGSPGIPGLPGVDGLTGPDGPAGKDGPPGAVGDRGPPGPGGPPGRGRPGVAG
LSGANGLPGGPGPQGPPGLEGLPGLPGLPGLDGPPGLPGTLPEGGGDLLCPAICPPGPPG
PPGMPGFKGHTGHKGDKGEMGKNGEKGDQGPPGPPGIPGTVGLQGPRGLRGLQGPVGSVG
DRGLPGFRGKPGVAGVIGKTGDSGEKGHQGFKGPKGEIGKIGPKGVPGGVGPKGEPGMPG
RDGKDGTQGLDGEKGDAGRPGVSGEKGPNGLPGLQGKAGTKGAKGGVGNPGEMGKTGPSG
EPGIPGDIGIPGERGLAGPRGVSGGIGLPGNAGPQGVKGYQGVKGALGDAGLPGPTGIRG
GFGEKGPVGARGPKGDMGMGGIDGLPGENGEPGPYGPVGQKGEPGKRGELGPKGVVGPQG
EIGGRGAPGRPGPLGFQGEQGYPGVPGKTGVPGNLASEQHIRELCGSMIDDQIAQLAANL
RRPLAPGAVGRPGPPGPPGKPGEVGSIGHPGASGPPGYRGLPGDLGDSGPRGDVGEPGDK
GPVGKAIEGPIGDQGEPGLPGVNGFVKDGRDGAPGDPGESGEAGRTGRPGHHGSPGICDT
SACQGPVVHSKSSSPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgttatcagctcttcagctacttgttctgtgtcagctgttagcatcatcgttt
gcccagaggccaggtcttcgtggtgaatctggagtgccagggccacctggacccccagga
aaagatggcattgatggtaagcctggtcctcctggacttccaggaaaacctgggccaaag
ggaaaagctggtacaccaggagccgcaggaagcccaggaatacctggcctccctggagtg
gatggtttgacaggtcctgatggtccagctggaaaggacgggccaccaggagcagtaggc
gacagaggacctcccggaccaggtggaccccctggcagaggcagaccaggagtggccggt
ctttctggagctaatggacttccaggtggaccaggacctcagggaccacctgggcttgag
gggcttccaggacttcctggtctgccgggcctggatggaccacctgggcttccaggaacg
cttcccgaaggtggcggagacctgctgtgtccggccatctgtcctccaggtccaccggga
cctccaggaatgcctggattcaagggtcatacaggtcataaaggagataagggagagatg
gggaaaaatggagaaaagggtgaccaaggcccacctggtcctcccgggatccccggtaca
gtgggtttacagggtccccgaggtctgagggggcttcagggtccagtgggatctgtagga
gatagaggattgcctggcttcaggggaaaacctggagttgccggtgtcattggaaaaact
ggtgacagtggcgaaaaaggacatcaaggtttcaaaggacccaaaggagagattggaaaa
ataggcccgaagggagtaccaggaggtgtgggacctaaaggtgaacctggcatgcctgga
cgagatgggaaggatggaactcaaggactggatggtgaaaagggggatgctggaagaccc
ggggtatctggtgagaaaggaccaaatggattgcctggtttgcaaggaaaagctggtaca
aaaggagccaagggaggagttggaaatccaggagagatgggaaaaaccggaccatctgga
gagccaggtatccctggtgatattggcatccccggagagagaggattggctggacccaga
ggtgtatctggtggcattggactgcctggaaatgctggtccacagggtgtaaaaggatac
cagggtgttaaaggtgcccttggtgatgcaggtttgcctgggccaactggaatcagaggc
gggtttggtgaaaagggtccagtcggggctagaggtcctaaaggagacatgggtatgggt
gggattgacggtttaccaggagagaacggagagcctggtccatatggtcctgtcgggcag
aaaggagagcctggtaaacgtggtgaactgggacctaaaggtgttgtaggaccacaggga
gagatcggaggaagaggtgcacctggaagacccggaccgttgggattccaaggagaacag
ggttatccaggggttcctggaaaaaccggtgttcctggcaacctggccagcgagcagcac
atcagggaactgtgcggatcaatgattgatgatcagattgctcagctggctgctaaccta
agaagacctctggctcctggtgctgtgggacgaccgggacctcccggacctccagggaag
ccaggagaagttggatctattggtcaccctggagcaagtggtccaccaggatatagagga
ttaccaggagatcttggcgattctggtcctagaggggatgttggtgagccgggtgataag
ggtccagttggtaaagccattgaagggcccattggcgaccagggtgaaccgggtctgcca
ggtgttaatggcttcgtgaaggatgggcgtgatggagcacctggagatccaggagagtca
ggagaagccggaagaacaggccgtccaggacaccatggatcacctggaatctgtgacacg
tcagcatgccagggtcctgtggttcattcgaagtcctccagtcccaagaaccattaa
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