Paramisgurnus dabryanus (large-scale loach): 135781326
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Entry
135781326 CDS
T10799
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X2
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135781326 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135781326 (cnot1)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135781326 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135781326 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
135781326
NCBI-ProteinID:
XP_065147816
LinkDB
All DBs
Position
23:complement(12928953..12950254)
Genome browser
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGFSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGEINKTMMESSLADFMKEVGYGFCASLEECRNIILQYGVREVTAGQVARVLGMMART
HSGLSDGIPLQSITSPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKELNPNLNFKEVTY
ELDHAGFVIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADCPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSILGPPLAPDKDQPKSAQLPPETLATMFACLQSC
AGSVSQELSETILNMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMG
SLNLGVTSTSHTTSMQGFPSLQGSAFSNPQSPAKAFSNLPNANPSTAFQGINPLSSQLQG
PLSTSLSGIGSGLGMPPVSSDPFGTRKMSTPGLNPSTFQQTDLSQVWPEANQHFTKEIDD
EANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYP
DKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLK
DYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQT
PKAPQPGQPSTLVTTATTTTTVAKTTTITRPTAVGLKKDVPPSINTTNIDTLLVATDQTE
RIVEPPENVQEKIAFIFNNLSQSNMSQKVEELKDTVKEEFMPWVSQYLVMKRVSIEPNFH
SLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAK
NKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVL
AELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKSLEEQLSAPKKETKPP
EEMLPIVTTVDPVAFTTAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHININIS
IPLLQAHPQLKQCVRLAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRV
AAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDN
CELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRL
KVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPADDVAHIYDKCISD
LEQHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALALLQKAVEGLLDATSGADT
DLLLSYRECHLMVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVN
MQQYDIHLAQSMENGLNYMAVAFAMQLVKLLLVDERSGSHITEADLFQTIETLMRTSAHS
RANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLRE
WVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQ
HPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHD
VRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWS
HDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaagaaatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatctattacgctgtctcttttcccatgtggattttagtggcgat
ggtaaaagcagtggcaaagattttcaccagacacagtttctgatccaggagtgtgtgtct
cttattaccaaaccaaattttatttcgacactctgctacgccattgacaatcccctgcac
tatcaaaagagcttaaagccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgatttttggccttgctctgctgaactctagcaacgcagac
cttagagggtttgctgcccagttcgtgaagcagaagcttcctgacctcctccgttcgtac
gtggacgcagacctcggaggaaatcaggaaggtggcttccaagacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggtcagaagggcttcagcggagtcggacaa
gagcagatcgacgcctttctcaaaacactgtgcagagatttcccgcaagagcgctgccct
gtggtgcttgcgccactgctctaccctgacaaacgggacattctcatggacaggatcttg
ccagactctggagagataaacaagaccatgatggagagttcccttgctgacttcatgaaa
gaagttggctatggcttttgtgcaagtcttgaagaatgcaggaacataatcttgcagtat
ggggtgcgagaggtgactgccggccaggtggccagagtgctgggaatgatggcccgcact
cactctgggctttcagatggcatccctttacagtccatcaccagtccagttggtggtggc
atttggagtgatgggaaggacaaaagtgatggctcccaggcccacacctggaacgttgag
gttctgattgatgtggtcaaagaattgaaccccaatctgaatttcaaagaagtgacctat
gagctggaccacgcaggttttgtgatccgggatagtaaggggcttcagatagtggtgtat
gggatccagaggggtctggggatggaggttttcccagtggatctcatttacagaccatgg
aagcacgcggaaggacagctgtcattcatccaacactctttgatgagtcctgaagtgttc
tgcttcgctgactgcccatgtcacactgtcgccattgacatcctgaaagccccacctgag
gatgacaacagagaaatagccacatggaagagcttggacctggtggagagccttttgcgt
ctctctgaagttgggcattatgaacaggtgaagcagctttttagcttccccatcaagcac
tgcccggatatgctggtgctggccctgctgcagatcagcacctcctggcacaccctgcgt
catgagctcatctccactctcatgcccatcttcctgggcaaccaccccaactccgccatc
atcttgcactatgcctggcatggacagggtcagtccccatccatccgtcagcttatcatg
cactctatggccgagtggtacatgagaggagagcaatacgaccaggctaaactgtctcgc
atcttggatgtggctcaggacttgaagtctttatcgatgctgctgaatggtactccattt
gcctttgtaattgaccttgctgcacttgcctctcgccgtgaatacctcaaactcgacaaa
tggctcactgacaaaatccgagagcacggggagccgtttatccaggcgtgtgtcacgttc
ctaaagagacgttgtccttccatcctgggtccacctttggccccagataaagaccagccg
aaaagtgctcagcttcctcctgaaacactggctaccatgtttgcatgtctccagtcttgt
gctgggagtgtatctcaagaactgtcagagaccatcttaaacatggtggccaactgtagc
aatgtgatgaacaaagcccggcagccaccaccgggagttctgccgaaggggcgagcaccc
agcaccagcagcttagatgctatctcacctgtgcagatggaccctctgtctgccatgggc
tcgctgaatttgggcgtcacatccacatctcacaccacaagcatgcaaggatttcccagc
cttcagggctctgccttcagtaacccccagtccccagctaaggccttttcaaacctgcct
aacgcaaatcccagcacagctttccaaggaatcaaccccctctcttctcagctacaaggt
cctctgagcacaagcttgtctgggatcggctcaggcttgggcatgccccctgtcagcagc
gaccccttcggcaccaggaagatgagcacaccggggttgaacccgtccaccttccagcag
actgacctttctcaggtgtggcccgaggcaaaccagcactttactaaggagattgacgat
gaggcgaacagctacttccagcgcatctacaaccaccctccgcaccccaccatgtctgtg
gatgaggtgctagaaatgcttcaacgattcaaggactccaacattaagcgggaacgggag
gtgtttaactgcatgctaaggaatctgtttgaggagtacagattttttccccagtatcct
gacaaagagctgcacatcaccgcttgcctcttcggggggatcatcgagaagggcctggtc
acatacatggcgctagggttggcgttacgatacgttctggaagctttacgcaaacctttc
ggatcaaagatgtattactttggaatcgctgcactagatagatttaaaaatagactgaag
gactatccccagtactgtcagcacttggcatctatagcccatttcttgcagttcccacac
catttacaagagtatatcgagtatggccagcagtcaagagaccctcctgtgaagatgcag
ggttccattaccaccccaggcagcctggcactagcccaagctcaagcccaatctcagacc
cccaaagccccccaacccggtcaacccagcacccttgtgaccacagctaccacgaccacc
actgttgccaaaaccaccaccatcaccagacccacagctgtcggactgaagaaagacgtg
ccaccttcgatcaacaccacaaacatcgacaccctgttggtggccaccgaccagactgaa
aggattgttgagcccccagagaatgtacaggaaaagattgcgttcatcttcaacaatttg
tctcagtcaaacatgtcccaaaaggttgaagaactgaaagacactgtgaaggaagagttc
atgccctgggtctctcaatacctggtcatgaaacgtgtcagtattgagcccaacttccat
agcctgtattctaactttctggatacactgaaaaaccctgagtttgtcaagatggttctc
aatgagacttacagaaacatcaaggtccttcttacctccgataaggcagctgctaacttt
tccgatcgatccctgctgaagaatttgggtcattggcttggaatgatcaccctggctaaa
aacaaacccatcttgtacacagacctggagctcaaatctcttctgctggaagcttatgtg
aaaggccagcaggagttgctgtatgttgtcccgtttgtggccaaagtcttggaatcaagt
ctgcggagcgtgatcttcagaccacagaacccttggactatgggtatcatgaatgtactg
gctgaactccatcaagaacatgacttaaagctcaacctaaagttcgagatcgaggttctc
tgtaagaatctgtctctggacatcagcgaactgaagccaggaaacctactgagagacaaa
gagaagctcaagagcctagaggagcagctctctgcaccaaagaaagagaccaagcctcct
gaagagatgctgcctatagttaccacagtagatcctgttgcgtttacaacagcaccttca
actccagcaaccaccactacctgtacggccacagggccacccacaccacagttcagctac
cacgacattaacgtctatgccctggctggcctggccccacatatcaatattaatatcagc
atcccactgctacaggcccaccctcaactgaagcagtgtgtgagactagctatcgagcgt
gccgtacaagagcttgtgcaccccgtggtggaccgatccatcaaaatcgccatgaccacc
tgcgagcagatcgtcaggaaggacttcgccctggattcagaggagtctcacatgcgcgtg
gccgcccaccacatgatgcgaaaccttactgccggcatggccatgatcacctgcagagag
ccgctgctcatgagcatcgccaccaatctgaagaacagctttgccgcagctctccgggca
cccacacctcagcagagagagatgatggaggaggcagctgcacgtatagcacaggacaac
tgtgagctggcatgttgcttcattcagaagacggcagtggagaaagccggaccagagatg
gacaagagactggcaactgaattcgagctgaggaagcatgcccgccaagaaggccgtcgt
tactgtgaccccatggtcctcacctatcaggctgaacgtatgccagagcagatcagacta
aaggtgggtggagtggaccctaaacagctggctgtttacgaggagtttgcacgaaacgtt
ccaggcttcctacctagtaatgatctttctcagcctactggattccttgctcaaccaatg
aagcaacaggcatggccggccgatgatgtggctcacatctacgacaagtgcatttcagac
ctggagcagcaccttcacgcaattccacccgccctggcgatgaacccacagactcaggcc
atacgcagcctactggaggccgtagtcatggccaggaactctcgtgacgggatcgctgcc
ctggccctcttacagaaggctgtggagggtctgctggatgccacaagcggtgctgatact
gatctgttgctaagctacagagagtgccacttgatggtgctaaaagccttacaggacggt
cgcgcatacggcccacaatggtgcaacaaacaaatcaccagatgcctgattgagtgcagg
gatgaatacaaatacaacgtcgaagctgtagagctgctcattagaaatcaccttgtcaac
atgcagcagtatgatatacatctggctcagtccatggagaacgggcttaactacatggcc
gtagcgtttgcaatgcagctggttaaacttctgctggtcgatgagcgcagcgggagccac
atcaccgaagcagatctcttccaaaccatcgagacgctcatgaggactagcgcccactcc
agagccaatgcacctgaaggtttgccccagctgatggatgttgtccgttccaactacgag
gccatgatcgatcgtcaccacggtgggcccaacttcatgatgcactctgggatttcccaa
gcttcggagtatgacgacccaccgggcctcagagaaaaggcagagtatttgctaagagaa
tgggtcaacctgtaccactcggcagctgctgggagggacagcactaaggccttttctgca
ttcgttggccagatgcatcagcagggcatcctgaagaccgatgacctcatcactcgcttt
ttccggctctgcacagagatgtgcgttgagatcagttaccgggctcaagccgaacagcag
caccccaccaccagccccgccatcatcagggccaagtgttaccacaacctggacgccttc
gttcggctcatcgcactactggtgaaacactccggagaggccaccaacacggtcaccaaa
atcaacctgctcaacaaggttttgggcattgtggttggcgtgctgattcaggatcatgac
gtgaggcagacggagttccagcagcttccttaccaccgaatcttcatcatgcttctgttg
gagctcaatgcaccagagcatgtgctggaaactatcaacttccaaacccttactgccttc
tgtaacaccttccacatcctgaggccaactaaagcacctgggttcgtatatgcctggttg
gagctgatttctcatcgcatcttcattgccaggatgctagcacacaccccacaacaaaag
ggttggcccatgtatgcacagctgctgattgatttgttcaagtatcttgcacccttccta
aggaatgttgaacttaacaaacctatgcaaattctctataagggaacgctacgcgtgctg
ctcgtcttgcttcatgacttcccagaattcctgtgtgactatcactacggcttctgtgac
gtcatcccacccaactgcatccagctgaggaacctgatcctgagtgcctttccccgcaat
atgaggcttccagaccccttcaccccgaatttgaaggtggatatgttaagcgagatcaac
atcgctccacgcatactcaccaacttcaccggtgtgatgccgtcccagttcaaaaaggat
cttgactcttacctaaagacccgctcacctgtcactttcctctctgagctgcgcagcaac
ctgcaggtgtccaatgaaccagggaaccggtacaacatccagctgatcaatgctttggtg
ttgtatgtgggcacccaggccatcgcccacatccacaacaagggcagcactccctccatg
agcaccattactcactcggcacacatggacatcttccagaaccttgcagtcgacctggac
accgagggccgctatctgttcttaaatgcgatagccaatcagctgcgttacccgaacagc
cacacacactacttcagctgtaccatgctgtatctgttcgcggaggccaatgctgaagcc
attcaagagcagatcaccagggtccttctggagaggctgatcgtgaaccggccgcacccg
tggggtctgctcatcacctttattgaactgatcaaaaatcctgcctttaagttctggagc
cacgattttgtgcactgtgcccctgaaatcgagaaattgttccagtcggtggctcagtgc
tgcatgggacagaaacaagcccagcaggtgatggagggaaccggtgccagttag
DBGET
integrated database retrieval system
